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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0000163 through 18771 annotations produced 1 hits



Bazooka (baz):

Annotation Number : CG5055
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0000163
Gbrowse : chrX:17054971-17089350 (+) // 100.0 //
Probeset : 1629227_at
Accessions : protein= NP_001036283; /// NP_523383;, nucleotide= NM_001042818; /// NM_078659;
Pathway : 0005737 // cytoplasm // non-traceable author statement /// 0005912 // adherens junction // inferred from direct assay //
Interpro : 0005080 // protein kinase C binding // inferred from sequence or structural similarity /// 0005515 // protein binding //
FlyMine data for FBgn0000163.
BioGrid reports that CG5055 interacts with CG10545 CG1725 CG5692 CG5692 .
TRiP has 5 RNAi stocks for FBgn0000163 available for purchase.
VDRC has 4 RNAi stocks for FBgn0000163 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain12 14 of 4 0.30Down
Head55 64 of 4 1.30None
Eye60 14 of 4 1.47Up
Thoracicoabdominal ganglion4 00 of 4 0.10Down
Salivary gland167 104 of 4 4.04Up
Crop126 34 of 4 3.10Up
Midgut70 44 of 4 1.70Up
Tubule28 14 of 4 0.70Down
Hindgut108 54 of 4 2.60Up
Heart50 44 of 4 1.21None
Fat body20 34 of 4 0.48Down
Ovary85 24 of 4 2.10Up
Testis19 34 of 4 0.50Down
Male accessory glands27 14 of 4 0.70None
Virgin spermatheca28 04 of 4 0.68None
Mated spermatheca36 24 of 4 0.88None
Adult carcass48 34 of 4 1.20None
Larval CNS93 114 of 4 2.27Up
Larval Salivary gland104 84 of 4 2.52Up
Larval midgut75 54 of 4 1.83Up
Larval tubule33 14 of 4 0.80None
Larval hindgut109 54 of 4 2.63Up
Larval fat body6 11 of 4 0.20Down
Larval trachea92 134 of 4 2.25Up
Larval carcass42 44 of 4 1.03None
S2 cells (growing)70 14 of 4 1.70Up
Whole fly41 64 of 4

Looking for FBgn0000163. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime