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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0000166 through 18771 annotations produced 2 hits


bicoid (bcd):

Annotation Number : CG40105
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0000166 /// FBgn0260469
Gbrowse : chr3R:2583482-2585105 (-) // 96.8 // /// chr2RHet:2909277-2910923 (-) // 100.0 //
Probeset : 1626502_s_at
Accessions : protein= NP_476825; /// NP_731111; /// NP_731113; /// NP_788587; /// NP_788588;, nucleotide= NM_057477; /// NM_169157; /// NM_169159; /// NM_176410; /// NM_176411;
Pathway : DNA-dependent // non-traceable author statement /// 0006355 // regulation of transcription
Interpro : DNA-dependent // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II
FlyMine data for FBgn0000166 /// FBgn0260469.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 10 of 4 0.10Down
Head1 ± 00 of 4 0.10Down
Eye2 ± 10 of 4 0.10Down
Thoracicoabdominal ganglion1 ± 00 of 4 0.00Down
Salivary gland1 ± 00 of 4 0.08Down
Crop1 ± 00 of 4 0.10Down
Midgut1 ± 00 of 4 0.10Down
Tubule2 ± 00 of 4 0.10Down
Hindgut1 ± 00 of 4 0.10Down
Heart4 ± 10 of 4 0.17Down
Fat body11 ± 70 of 4 0.46None
Ovary111 ± 24 of 4 4.50Up
Testis3 ± 10 of 4 0.10Down
Male accessory glands2 ± 00 of 4 0.10Down
Virgin spermatheca2 ± 00 of 4 0.09Down
Mated spermatheca7 ± 30 of 4 0.29Down
Adult carcass1 ± 00 of 4 0.10Down
Larval CNS4 ± 20 of 4 0.18Down
Larval Salivary gland6 ± 20 of 4 0.27Down
Larval midgut3 ± 10 of 4 0.15Down
Larval tubule3 ± 10 of 4 0.20Down
Larval hindgut0 ± 00 of 4 0.04Down
Larval fat body2 ± 00 of 4 0.10Down
Larval trachea10 ± 10 of 4 0.42None
Larval carcass1 ± 00 of 4 0.06Down
S2 cells (growing)1 ± 00 of 4 0.04Down
Whole fly24 ± 50 of 4


(March 2006 (FlyBase/BDGP 5.3)):

Annotation Number : CG1034
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : bcd
Gbrowse :
Probeset : 1631463_a_at
Accessions : protein= P09081, nucleotide=
FlyMine data for bcd.
BioGrid reports that CG1034 interacts with CG11326 CG11899 CG13114 CG1418 CG14206 CG17935 CG18617 CG2033 CG2189 CG31759 CG32356 CG33115 CG3533 CG3918 CG4328 Dmel CG34168 CG7570 CG12519 CG14096 CG18294 CG3924 CG17958 CG9786 CG9786 CG9786 CG9786 CG9786 CG9786 CG5637 CG5637 CG5637 CG10901 CG1389 CG5619 CG6705 CG6705 CG6705 CG6705 CG6705 CG1856 CG6046 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.00Down
Head1 ± 00 of 4 0.00Down
Eye2 ± 11 of 4 0.01Down
Thoracicoabdominal ganglion2 ± 10 of 4 0.00Down
Salivary gland5 ± 40 of 4 0.04Down
Crop6 ± 20 of 4 0.00Down
Midgut4 ± 01 of 4 0.00Down
Tubule6 ± 30 of 4 0.00Down
Hindgut1 ± 00 of 4 0.00Down
Heart3 ± 10 of 4 0.02Down
Fat body5 ± 20 of 4 0.03Down
Ovary1028 ± 214 of 4 6.40Up
Testis3 ± 00 of 4 0.00Down
Male accessory glands3 ± 10 of 4 0.00Down
Virgin spermatheca3 ± 10 of 4 0.02Down
Mated spermatheca6 ± 20 of 4 0.04Down
Adult carcass11 ± 31 of 4 0.10Down
Larval CNS1 ± 00 of 4 0.01Down
Larval Salivary gland3 ± 11 of 4 0.02Down
Larval midgut5 ± 01 of 4 0.03Down
Larval tubule1 ± 00 of 4 0.00Down
Larval hindgut1 ± 00 of 4 0.01Down
Larval fat body3 ± 10 of 4 0.00Down
Larval trachea1 ± 00 of 4 0.01Down
Larval carcass1 ± 00 of 4 0.01Down
S2 cells (growing)0 ± 00 of 4 0.00Down
Whole fly161 ± 224 of 4

Looking for FBgn0000166. 2 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime