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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0000173 through 18771 annotations produced 1 hits

bendless (ben):

Annotation Number : CG18319
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0000173
Gbrowse : chrX:13890386-13893841 (+) // 100.0 //
Probeset : 1641279_at
Accessions : protein= NP_001162752; /// NP_511150;, nucleotide= NM_001169281; /// NM_078595;
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0004842 // ubiquitin-protein ligase activity //
FlyMine data for FBgn0000173.
Homophila reports that CG18319 is a close match (2e-11) to human gene RAD6A;UBE2A (NP_861442), a gene associated with Mental retardation, X-linked syndromic (3).
BioGrid reports that CG18319 interacts with CG5140 .
TRiP has 1 RNAi stocks for FBgn0000173 available for purchase.
VDRC has 2 RNAi stocks for FBgn0000173 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain996 584 of 4 2.40Up
Head1015 1054 of 4 2.50Up
Eye1068 234 of 4 2.62Up
Thoracicoabdominal ganglion1092 94 of 4 2.70Up
Salivary gland478 144 of 4 1.18None
Crop1040 514 of 4 2.60Up
Midgut515 194 of 4 1.30None
Tubule676 304 of 4 1.70Up
Hindgut801 434 of 4 2.00Up
Heart518 394 of 4 1.27None
Fat body984 1054 of 4 2.42Up
Ovary221 84 of 4 0.50Down
Testis123 94 of 4 0.30Down
Male accessory glands629 274 of 4 1.50Up
Virgin spermatheca784 664 of 4 1.93Up
Mated spermatheca842 374 of 4 2.07Up
Adult carcass481 124 of 4 1.20None
Larval CNS1376 1844 of 4 3.38Up
Larval Salivary gland907 784 of 4 2.23Up
Larval midgut1217 954 of 4 2.99Up
Larval tubule1612 784 of 4 4.00Up
Larval hindgut1409 464 of 4 3.46Up
Larval fat body1033 1114 of 4 2.50Up
Larval trachea678 194 of 4 1.67Up
Larval carcass1082 364 of 4 2.66Up
S2 cells (growing)647 444 of 4 1.59Up
Whole fly407 464 of 4

Looking for FBgn0000173. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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