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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0000181 through 18771 annotations produced 1 hits

Enhancer of Bicaudal (bic):

Annotation Number : CG3644
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0000181
Gbrowse : chr2R:8757741-8759608 (+) // 100.0 //
Probeset : 1627623_s_at
Accessions : protein= NP_476853; /// NP_725235;, nucleotide= NM_057505; /// NM_165954;
Pathway : 0005854 // nascent polypeptide-associated complex // non-traceable author statement /// 0005875 // microtubule associate
Interpro : 0003700 // sequence-specific DNA binding transcription factor activity // inferred from sequence or structural similarit
FlyMine data for FBgn0000181.
BDGP gene expression has embryonic in situ data for bic: 22 pix of staining in 7 body parts.
BioGrid reports that CG3644 interacts with CG5156 CG6117 CG8759 CG5144 CG5168 CG7041 CG7066 CG8725 CG9520 CG9610 CG4824 CG6605 .
TRiP has 1 RNAi stocks for FBgn0000181 available for purchase.
VDRC has 2 RNAi stocks for FBgn0000181 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain146 34 of 4 2.30Up
Head94 54 of 4 1.50Up
Eye216 114 of 4 3.45Up
Thoracicoabdominal ganglion90 44 of 4 1.40Up
Salivary gland199 64 of 4 3.18Up
Crop63 34 of 4 1.00None
Midgut55 24 of 4 0.90None
Tubule76 44 of 4 1.20Up
Hindgut48 14 of 4 0.80Down
Heart86 24 of 4 1.38Up
Fat body75 104 of 4 1.21None
Ovary55 24 of 4 0.90None
Testis57 44 of 4 0.90None
Male accessory glands408 214 of 4 6.50Up
Virgin spermatheca122 34 of 4 1.95Up
Mated spermatheca103 54 of 4 1.64Up
Adult carcass81 34 of 4 1.30Up
Larval CNS105 164 of 4 1.68Up
Larval Salivary gland143 154 of 4 2.28Up
Larval midgut48 24 of 4 0.78Down
Larval tubule55 34 of 4 0.90None
Larval hindgut58 34 of 4 0.93None
Larval fat body73 64 of 4 1.20None
Larval trachea119 44 of 4 1.91Up
Larval carcass72 44 of 4 1.16None
S2 cells (growing)44 24 of 4 0.70Down
Whole fly62 34 of 4

Looking for FBgn0000181. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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