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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0000183 through 18771 annotations produced 1 hits



Bicaudal-D (BicD):

Annotation Number : CG6605
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0000183
Gbrowse : chr2L:17460833-17473255 (-) // 100.0 //
Probeset : 1630650_at
Accessions : protein= NP_724056;, nucleotide= NM_165220;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic a
Interpro : 0003729 // mRNA binding // non-traceable author statement /// 0005515 // protein binding // inferred from physical inter
FlyMine data for FBgn0000183.
BDGP gene expression has embryonic in situ data for BicD: 54 pix of staining in 22 body parts.
BioGrid reports that CG6605 interacts with CG7238 CG4051 CG5263 CG3506 .
TRiP has 2 RNAi stocks for FBgn0000183 available for purchase.
VDRC has 3 RNAi stocks for FBgn0000183 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain135 44 of 4 0.80Down
Head115 44 of 4 0.70Down
Eye109 74 of 4 0.62Down
Thoracicoabdominal ganglion97 64 of 4 0.50Down
Salivary gland314 264 of 4 1.78Up
Crop279 184 of 4 1.60Up
Midgut266 84 of 4 1.50Up
Tubule219 84 of 4 1.20Up
Hindgut263 84 of 4 1.50Up
Heart274 154 of 4 1.55Up
Fat body84 114 of 4 0.48Down
Ovary436 44 of 4 2.50Up
Testis42 24 of 4 0.20Down
Male accessory glands242 144 of 4 1.40Up
Virgin spermatheca156 104 of 4 0.88None
Mated spermatheca173 204 of 4 0.98None
Adult carcass91 34 of 4 0.50Down
Larval CNS104 64 of 4 0.59Down
Larval Salivary gland187 134 of 4 1.06None
Larval midgut391 284 of 4 2.21Up
Larval tubule396 144 of 4 2.20Up
Larval hindgut417 94 of 4 2.36Up
Larval fat body42 44 of 4 0.20Down
Larval trachea218 264 of 4 1.24Up
Larval carcass327 134 of 4 1.85Up
S2 cells (growing)306 94 of 4 1.73Up
Whole fly177 74 of 4

Looking for FBgn0000183. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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