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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0000206 through 18771 annotations produced 1 hits



bride of sevenless (boss):

Annotation Number : CG8285
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0000206
Gbrowse : chr3R:21787715-21792670 (+) // 100.0 //
Probeset : 1628369_at
Accessions : protein= NP_542440;, nucleotide= NM_080709;
Pathway : 0005886 // plasma membrane // non-traceable author statement /// 0005886 // plasma membrane // inferred from electronic
Interpro : 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferre
FlyMine data for FBgn0000206.
BioGrid reports that CG8285 interacts with CG6721 CG5460 CG7873 CG18085 .
VDRC has 2 RNAi stocks for FBgn0000206 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain13 ± 03 of 4 0.50Down
Head539 ± 254 of 420.30Up
Eye1598 ± 444 of 460.05Up
Thoracicoabdominal ganglion5 ± 20 of 4 0.20Down
Salivary gland13 ± 80 of 4 0.50None
Crop3 ± 10 of 4 0.10Down
Midgut1 ± 00 of 4 0.10Down
Tubule3 ± 00 of 4 0.10Down
Hindgut2 ± 10 of 4 0.10Down
Heart2 ± 00 of 4 0.09Down
Fat body2 ± 20 of 4 0.11Down
Ovary0 ± 00 of 4 0.00Down
Testis8 ± 00 of 4 0.30Down
Male accessory glands1 ± 00 of 4 0.00Down
Virgin spermatheca6 ± 10 of 4 0.23Down
Mated spermatheca6 ± 20 of 4 0.24Down
Adult carcass10 ± 30 of 4 0.40Down
Larval CNS2 ± 20 of 4 0.11Down
Larval Salivary gland1 ± 00 of 4 0.07Down
Larval midgut0 ± 00 of 4 0.02Down
Larval tubule3 ± 10 of 4 0.10Down
Larval hindgut1 ± 00 of 4 0.06Down
Larval fat body5 ± 20 of 4 0.20Down
Larval trachea25 ± 461 of 4 0.95None
Larval carcass3 ± 10 of 4 0.12Down
S2 cells (growing)1 ± 00 of 4 0.04Down
Whole fly26 ± 34 of 4

Looking for FBgn0000206. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime