FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0000210 through 18771 annotations produced 5 hits

chrX:1506373-1553964 (+) // 100.0 // (broad):

Annotation Number : CG11491
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1629683_at
Accessions : protein= , nucleotide= NP_001138144; /// NP_001162638; /// NP_524759; /// NP_726749; /// NP_726750; /// NP_726751; /// NP_726752; /// NP_726753; /// NP_726754;
Pathway : "0001752 // compound eye photoreceptor fate commitment // inferred from mutant phenotype /// 0006355 // regulation of tr
Interpro : DNA-dependent // non-traceable author statement /// 0006914 // autophagy // inferred from mutant phenotype /// 0007275
FlyMine data for full length.
BioGrid reports that CG11491 interacts with CG4270 CG13458 CG15459 CG17086 CG17666 CG31740 Dmel CG34168 CG7109 CG7570 CG4059 .

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	5 ± 0	0 of 4	1.10	None
Head	2 ± 1	0 of 4	0.60	None
Eye	5 ± 0	0 of 4	1.17	None
Thoracicoabdominal ganglion	5 ± 2	0 of 4	1.30	None
Salivary gland	13 ± 5	0 of 4	2.86	None
Crop	5 ± 2	0 of 4	1.20	None
Midgut	5 ± 1	0 of 4	1.20	None
Tubule	3 ± 1	0 of 4	0.80	None
Hindgut	2 ± 1	0 of 4	0.60	None
Heart	2 ± 0	0 of 4	0.45	None
Fat body	7 ± 6	0 of 4	1.63	None
Ovary	3 ± 0	0 of 4	0.80	None
Testis	9 ± 0	4 of 4	2.00	None
Male accessory glands	10 ± 1	0 of 4	2.20	None
Virgin spermatheca	3 ± 1	0 of 4	0.77	None
Mated spermatheca	6 ± 2	0 of 4	1.35	None
Adult carcass	5 ± 2	0 of 4	1.20	None
Larval CNS	90 ± 27	4 of 4	19.67	Up
Larval Salivary gland	50 ± 2	4 of 4	11.03	Up
Larval midgut	41 ± 7	3 of 4	9.07	Up
Larval tubule	121 ± 8	4 of 4	26.30	Up
Larval hindgut	38 ± 6	4 of 4	8.39	Up
Larval fat body	77 ± 10	4 of 4	16.70	Up
Larval trachea	45 ± 5	4 of 4	9.81	Up
Larval carcass	117 ± 37	4 of 4	25.56	None
S2 cells (growing)	22 ± 1	4 of 4	4.91	Up
Whole fly	4 ± 1	0 of 4

chrX:1506373-1549402 (+) // 100.0 // (broad):

Annotation Number : CG11491
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1636931_at
Accessions : protein= , nucleotide= NP_001138144; /// NP_001162638; /// NP_524759; /// NP_726749; /// NP_726750; /// NP_726751; /// NP_726752; /// NP_726753; /// NP_726754;
Pathway : "0001752 // compound eye photoreceptor fate commitment // inferred from mutant phenotype /// 0006355 // regulation of tr
Interpro : DNA-dependent // non-traceable author statement /// 0006914 // autophagy // inferred from mutant phenotype /// 0007275
FlyMine data for full length.
BioGrid reports that CG11491 interacts with CG4270 CG13458 CG15459 CG17086 CG17666 CG31740 Dmel CG34168 CG7109 CG7570 CG4059 .

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	6 ± 1	0 of 4	0.90	None
Head	9 ± 1	1 of 4	1.40	None
Eye	3 ± 1	0 of 4	0.47	None
Thoracicoabdominal ganglion	8 ± 1	0 of 4	1.20	None
Salivary gland	9 ± 3	0 of 4	1.41	None
Crop	11 ± 2	1 of 4	1.70	None
Midgut	8 ± 2	1 of 4	1.20	None
Tubule	4 ± 0	0 of 4	0.60	Down
Hindgut	5 ± 0	0 of 4	0.80	None
Heart	3 ± 1	1 of 4	0.56	None
Fat body	12 ± 1	4 of 4	1.82	Up
Ovary	6 ± 1	1 of 4	0.90	None
Testis	5 ± 1	1 of 4	0.70	None
Male accessory glands	10 ± 0	0 of 4	1.40	None
Virgin spermatheca	8 ± 1	1 of 4	1.23	None
Mated spermatheca	6 ± 2	1 of 4	0.91	None
Adult carcass	15 ± 4	0 of 4	2.20	None
Larval CNS	14 ± 2	4 of 4	2.02	Up
Larval Salivary gland	13 ± 2	2 of 4	2.00	None
Larval midgut	13 ± 1	1 of 4	1.91	Up
Larval tubule	14 ± 1	2 of 4	2.10	Up
Larval hindgut	9 ± 2	3 of 4	1.37	None
Larval fat body	21 ± 0	4 of 4	3.10	Up
Larval trachea	19 ± 6	4 of 4	2.82	Up
Larval carcass	26 ± 7	4 of 4	3.76	None
S2 cells (growing)	23 ± 1	4 of 4	3.31	Up
Whole fly	7 ± 1	2 of 4

chrX:1506373-1539198 (+) // 100.0 // (broad):

Annotation Number : CG11491
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1637312_a_at
Accessions : protein= , nucleotide= NP_001138144; /// NP_001162638; /// NP_524759; /// NP_726749; /// NP_726750; /// NP_726751; /// NP_726752; /// NP_726753; /// NP_726754;
Pathway : "0001752 // compound eye photoreceptor fate commitment // inferred from mutant phenotype /// 0006355 // regulation of tr
Interpro : DNA-dependent // non-traceable author statement /// 0006914 // autophagy // inferred from mutant phenotype /// 0007275
FlyMine data for full length.
BioGrid reports that CG11491 interacts with CG4270 CG13458 CG15459 CG17086 CG17666 CG31740 Dmel CG34168 CG7109 CG7570 CG4059 .

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	4 ± 0	2 of 4	0.30	Down
Head	1 ± 0	0 of 4	0.10	Down
Eye	3 ± 1	0 of 4	0.20	Down
Thoracicoabdominal ganglion	7 ± 0	1 of 4	0.40	Down
Salivary gland	12 ± 4	0 of 4	0.73	None
Crop	3 ± 1	0 of 4	0.20	Down
Midgut	1 ± 1	0 of 4	0.10	Down
Tubule	3 ± 0	0 of 4	0.20	Down
Hindgut	3 ± 1	0 of 4	0.20	Down
Heart	3 ± 1	1 of 4	0.20	Down
Fat body	5 ± 3	1 of 4	0.32	Down
Ovary	30 ± 5	4 of 4	1.80	None
Testis	3 ± 0	0 of 4	0.20	Down
Male accessory glands	14 ± 2	3 of 4	0.90	None
Virgin spermatheca	3 ± 0	0 of 4	0.22	Down
Mated spermatheca	2 ± 0	0 of 4	0.14	Down
Adult carcass	3 ± 2	0 of 4	0.20	Down
Larval CNS	175 ± 29	4 of 4	10.59	Up
Larval Salivary gland	1635 ± 225	4 of 4	98.69	Up
Larval midgut	77 ± 20	4 of 4	4.67	None
Larval tubule	333 ± 34	4 of 4	20.10	Up
Larval hindgut	152 ± 22	4 of 4	9.18	Up
Larval fat body	321 ± 18	4 of 4	19.40	Up
Larval trachea	84 ± 22	4 of 4	5.13	Up
Larval carcass	210 ± 43	4 of 4	12.71	Up
S2 cells (growing)	7 ± 1	3 of 4	0.44	Down
Whole fly	16 ± 2	4 of 4

chrX:1504544-1543426 (+) // 99.9 // (broad):

Annotation Number : CG11491
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1626996_s_at
Accessions : protein= , nucleotide= NP_001138144; /// NP_001162638; /// NP_524759; /// NP_726749; /// NP_726750; /// NP_726751; /// NP_726752; /// NP_726753; /// NP_726754;
Pathway : "0001752 // compound eye photoreceptor fate commitment // inferred from mutant phenotype /// 0006355 // regulation of tr
Interpro : DNA-dependent // non-traceable author statement /// 0006914 // autophagy // inferred from mutant phenotype /// 0007275
FlyMine data for full length.
BioGrid reports that CG11491 interacts with CG4270 CG13458 CG15459 CG17086 CG17666 CG31740 Dmel CG34168 CG7109 CG7570 CG4059 .

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	102 ± 5	4 of 4	20.40	Up
Head	10 ± 0	2 of 4	2.00	Up
Eye	9 ± 1	1 of 4	1.93	Up
Thoracicoabdominal ganglion	113 ± 10	4 of 4	22.50	Up
Salivary gland	15 ± 4	0 of 4	3.03	None
Crop	10 ± 2	1 of 4	2.00	None
Midgut	9 ± 1	3 of 4	1.80	None
Tubule	8 ± 0	0 of 4	1.60	Up
Hindgut	8 ± 1	1 of 4	1.70	None
Heart	5 ± 1	0 of 4	1.05	None
Fat body	16 ± 6	1 of 4	3.22	Up
Ovary	7 ± 0	1 of 4	1.50	Up
Testis	3 ± 1	0 of 4	0.80	None
Male accessory glands	9 ± 1	0 of 4	1.80	None
Virgin spermatheca	14 ± 2	4 of 4	2.81	Up
Mated spermatheca	11 ± 2	3 of 4	2.22	None
Adult carcass	2 ± 0	0 of 4	0.50	Down
Larval CNS	85 ± 32	4 of 4	17.03	Up
Larval Salivary gland	136 ± 21	4 of 4	27.24	Up
Larval midgut	35 ± 8	4 of 4	7.12	Up
Larval tubule	279 ± 24	4 of 4	55.70	Up
Larval hindgut	49 ± 6	4 of 4	9.75	Up
Larval fat body	227 ± 15	4 of 4	45.30	Up
Larval trachea	172 ± 33	4 of 4	34.33	Up
Larval carcass	70 ± 15	4 of 4	13.98	Up
S2 cells (growing)	5 ± 0	1 of 4	1.11	None
Whole fly	5 ± 0	0 of 4

chrX:1518170-1555575 (+) // 100.0 // (broad):

Annotation Number : CG11491
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1635691_at
Accessions : protein= , nucleotide= NP_001138144; /// NP_001162638; /// NP_524759; /// NP_726749; /// NP_726750; /// NP_726751; /// NP_726752; /// NP_726753; /// NP_726754;
Pathway : "0001752 // compound eye photoreceptor fate commitment // inferred from mutant phenotype /// 0006355 // regulation of tr
Interpro : DNA-dependent // non-traceable author statement /// 0006914 // autophagy // inferred from mutant phenotype /// 0007275
FlyMine data for full length.
BioGrid reports that CG11491 interacts with CG4270 CG13458 CG15459 CG17086 CG17666 CG31740 Dmel CG34168 CG7109 CG7570 CG4059 .

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	110 ± 1	4 of 4	5.90	Up
Head	9 ± 1	3 of 4	0.50	Down
Eye	7 ± 1	1 of 4	0.42	Down
Thoracicoabdominal ganglion	119 ± 5	4 of 4	6.40	Up
Salivary gland	6 ± 2	0 of 4	0.34	Down
Crop	7 ± 0	2 of 4	0.40	Down
Midgut	1 ± 0	0 of 4	0.10	Down
Tubule	11 ± 1	2 of 4	0.60	Down
Hindgut	3 ± 1	0 of 4	0.20	Down
Heart	3 ± 1	0 of 4	0.21	Down
Fat body	39 ± 24	3 of 4	2.13	None
Ovary	35 ± 1	4 of 4	1.90	Up
Testis	2 ± 1	0 of 4	0.10	Down
Male accessory glands	7 ± 1	0 of 4	0.40	Down
Virgin spermatheca	24 ± 4	4 of 4	1.29	None
Mated spermatheca	33 ± 14	2 of 4	1.81	None
Adult carcass	6 ± 2	1 of 4	0.30	Down
Larval CNS	2025 ± 256	4 of 4	108.76	Up
Larval Salivary gland	912 ± 101	4 of 4	48.98	Up
Larval midgut	629 ± 173	4 of 4	33.80	Up
Larval tubule	2033 ± 129	4 of 4	109.20	Up
Larval hindgut	1048 ± 151	4 of 4	56.27	Up
Larval fat body	1131 ± 100	4 of 4	60.70	Up
Larval trachea	920 ± 170	4 of 4	49.44	Up
Larval carcass	1728 ± 251	4 of 4	92.81	Up
S2 cells (growing)	54 ± 2	4 of 4	2.94	Up
Whole fly	18 ± 1	4 of 4

Looking for FBgn0000210. 5 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720