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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0000216 through 18771 annotations produced 1 hits

Bearded (Brd):

Annotation Number : CG3096
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0000216
Gbrowse : chr3L:14965768-14966301 (+) // 100.0 //
Probeset : 1636672_at
Accessions : protein= NP_476889;, nucleotide= NM_057541;
FlyMine data for FBgn0000216.
BioGrid reports that CG3096 interacts with CG3619 CG5460 CG3936 CG10393 CG11988 .
VDRC has 1 RNAi stocks for FBgn0000216 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 10 of 4 0.10None
Head8 20 of 4 0.30None
Eye5 10 of 4 0.18None
Thoracicoabdominal ganglion11 10 of 4 0.30None
Salivary gland29 20 of 4 0.93None
Crop15 10 of 4 0.50None
Midgut12 50 of 4 0.40None
Tubule5 00 of 4 0.20Down
Hindgut11 30 of 4 0.40None
Heart2 10 of 4 0.09None
Fat body14 40 of 4 0.43None
Ovary4 00 of 4 0.10None
Testis1 00 of 4 0.00None
Male accessory glands15 31 of 4 0.50None
Virgin spermatheca12 20 of 4 0.38None
Mated spermatheca11 10 of 4 0.34None
Adult carcass10 10 of 4 0.30None
Larval CNS204 224 of 4 6.38Up
Larval Salivary gland9 30 of 4 0.30None
Larval midgut15 40 of 4 0.47None
Larval tubule5 20 of 4 0.20None
Larval hindgut11 20 of 4 0.35None
Larval fat body10 30 of 4 0.30None
Larval trachea12 24 of 4 0.39None
Larval carcass57 42 of 4 1.78None
S2 cells (growing)8 00 of 4 0.26None
Whole fly32 122 of 4

Looking for FBgn0000216. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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