Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
About & FAQ
Top 50
Original data
Interesting meta-analysis

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0000227 through 18771 annotations produced 1 hits

blastoderm-specific gene 25A (Bsg25A):

Annotation Number : CG12205
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0000227
Gbrowse : chr2L:4683049-4684459 (-) // 100.0 //
Probeset : 1623892_at
Accessions : protein= NP_523472;, nucleotide= NM_078748;
FlyMine data for FBgn0000227.
BDGP gene expression has embryonic in situ data for Bsg25A: 36 pix of staining in 5 body parts.
BioGrid reports that CG12205 interacts with CG9986 .
VDRC has 2 RNAi stocks for FBgn0000227 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 10 of 4 1.10None
Head0 00 of 4 0.30None
Eye1 00 of 4 0.53None
Thoracicoabdominal ganglion0 00 of 4 0.30None
Salivary gland2 00 of 4 1.17None
Crop2 10 of 4 1.30None
Midgut2 10 of 4 1.20None
Tubule1 00 of 4 0.60Down
Hindgut1 00 of 4 0.50None
Heart0 00 of 4 0.36None
Fat body1 00 of 4 0.60None
Ovary0 00 of 4 0.20None
Testis0 00 of 4 0.30None
Male accessory glands2 10 of 4 1.10None
Virgin spermatheca1 00 of 4 0.44None
Mated spermatheca1 00 of 4 0.56None
Adult carcass1 00 of 4 0.70None
Larval CNS2 10 of 4 1.01None
Larval Salivary gland1 00 of 4 0.82None
Larval midgut1 00 of 4 0.57None
Larval tubule0 00 of 4 0.30None
Larval hindgut0 00 of 4 0.33None
Larval fat body1 00 of 4 0.90None
Larval trachea0 00 of 4 0.37None
Larval carcass0 00 of 4 0.41None
S2 cells (growing)0 00 of 4 0.31None
Whole fly2 10 of 4

Looking for FBgn0000227. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime