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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0000228 through 18771 annotations produced 1 hits



Blastoderm-specific gene 25D (Bsg25D):

Annotation Number : CG14025
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0000228
Gbrowse : chr2L:5271747-5278558 (-) // 100.0 //
Probeset : 1626798_a_at
Accessions : protein= NP_476916; /// NP_723072; /// NP_723073;, nucleotide= NM_057568; /// NM_164637; /// NM_164638;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0000228.
BDGP gene expression has embryonic in situ data for Bsg25D: 24 pix of staining in 15 body parts.
BioGrid reports that CG14025 interacts with CG1678 CG9795 CG2709 CG32772 CG4328 CG4767 CG5272 CG7164 CG7172 CG7725 CG7757 CG7920 CG8669 CG9277 .
TRiP has 1 RNAi stocks for FBgn0000228 available for purchase.
VDRC has 2 RNAi stocks for FBgn0000228 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain368 ± 74 of 4 1.50Up
Head227 ± 54 of 4 1.00None
Eye287 ± 154 of 4 1.20None
Thoracicoabdominal ganglion333 ± 64 of 4 1.40Up
Salivary gland229 ± 114 of 4 0.96None
Crop480 ± 134 of 4 2.00Up
Midgut153 ± 34 of 4 0.60Down
Tubule73 ± 24 of 4 0.30Down
Hindgut239 ± 64 of 4 1.00None
Heart184 ± 74 of 4 0.77Down
Fat body131 ± 44 of 4 0.55Down
Ovary694 ± 134 of 4 2.90Up
Testis13 ± 24 of 4 0.10Down
Male accessory glands601 ± 394 of 4 2.50Up
Virgin spermatheca131 ± 84 of 4 0.55Down
Mated spermatheca137 ± 94 of 4 0.58Down
Adult carcass156 ± 74 of 4 0.70Down
Larval CNS199 ± 84 of 4 0.83None
Larval Salivary gland164 ± 14 of 4 0.69Down
Larval midgut191 ± 154 of 4 0.80None
Larval tubule226 ± 54 of 4 0.90None
Larval hindgut282 ± 64 of 4 1.18None
Larval fat body183 ± 54 of 4 0.80Down
Larval trachea281 ± 64 of 4 1.18None
Larval carcass172 ± 84 of 4 0.72Down
S2 cells (growing)124 ± 24 of 4 0.52Down
Whole fly239 ± 144 of 4

Looking for FBgn0000228. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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