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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0000233 through 18771 annotations produced 1 hits



chrX:9588220-9591594 (+) // 99.59 // (buttonhead):

Annotation Number : CG12653
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1633396_at
Accessions : protein= , nucleotide= NP_511100;
Pathway : "0006350 // transcription // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA pol
Interpro : head // non-traceable author statement /// 0035287 // head segmentation // inferred from mutant phenotype /// 0035288 /
FlyMine data for full length.
Homophila reports that CG12653 is a close match (2e-11) to human gene ZBTB16;ZNF145;PLZF (NP_005997), a gene associated with Leukemia, acute promyelocytic, PL2F/RARA type (3).
BioGrid reports that CG12653 interacts with CG15545 CG1343 CG6711 CG5444 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain13 ± 13 of 4 1.90Up
Head7 ± 21 of 4 1.00None
Eye2 ± 00 of 4 0.34Down
Thoracicoabdominal ganglion29 ± 04 of 4 3.90Up
Salivary gland21 ± 30 of 4 2.82Up
Crop7 ± 20 of 4 0.90None
Midgut1 ± 00 of 4 0.20Down
Tubule2 ± 00 of 4 0.30Down
Hindgut3 ± 10 of 4 0.50None
Heart2 ± 10 of 4 0.33Down
Fat body11 ± 50 of 4 1.55None
Ovary1 ± 00 of 4 0.20Down
Testis0 ± 00 of 4 0.10Down
Male accessory glands8 ± 10 of 4 1.10None
Virgin spermatheca4 ± 21 of 4 0.59None
Mated spermatheca7 ± 20 of 4 1.00None
Adult carcass13 ± 21 of 4 1.80None
Larval CNS72 ± 54 of 4 9.80Up
Larval Salivary gland4 ± 00 of 4 0.61None
Larval midgut2 ± 10 of 4 0.30Down
Larval tubule3 ± 00 of 4 0.40Down
Larval hindgut3 ± 00 of 4 0.41Down
Larval fat body4 ± 10 of 4 0.50None
Larval trachea3 ± 30 of 4 0.53None
Larval carcass15 ± 10 of 4 2.09Up
S2 cells (growing)1 ± 00 of 4 0.26Down
Whole fly7 ± 11 of 4

Looking for FBgn0000233. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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