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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0000246 through 18771 annotations produced 1 hits



crossover suppressor on 3 of Gowan (c(3)G):

Annotation Number : CG17604
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0000246
Gbrowse : chr3R:11615221-11618294 (-) // 100.0 //
Probeset : 1632901_s_at
Accessions : protein= NP_650490; /// NP_732065; /// NP_732066;, nucleotide= NM_142233; /// NM_169670; /// NM_169671;
Pathway : 0000795 // synaptonemal complex // inferred from direct assay
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0000246.
BioGrid reports that CG17604 interacts with CG3939 CG4412 CG31523 CG3838 CG4432 CG5005 CG5053 CG5371 CG8649 CG9764 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain28 04 of 4 0.30Down
Head10 21 of 4 0.10Down
Eye13 42 of 4 0.16Down
Thoracicoabdominal ganglion25 14 of 4 0.30Down
Salivary gland16 20 of 4 0.19Down
Crop19 14 of 4 0.20Down
Midgut12 12 of 4 0.10Down
Tubule11 01 of 4 0.10Down
Hindgut8 00 of 4 0.10Down
Heart10 13 of 4 0.12Down
Fat body11 62 of 4 0.14Down
Ovary179 64 of 4 2.10Up
Testis27 14 of 4 0.30Down
Male accessory glands11 31 of 4 0.10Down
Virgin spermatheca14 14 of 4 0.16Down
Mated spermatheca17 13 of 4 0.20Down
Adult carcass10 41 of 4 0.10Down
Larval CNS32 34 of 4 0.38Down
Larval Salivary gland23 14 of 4 0.27Down
Larval midgut12 10 of 4 0.14Down
Larval tubule13 14 of 4 0.20Down
Larval hindgut10 23 of 4 0.12Down
Larval fat body13 31 of 4 0.20Down
Larval trachea29 54 of 4 0.34Down
Larval carcass9 10 of 4 0.11Down
S2 cells (growing)18 04 of 4 0.21Down
Whole fly86 34 of 4

Looking for FBgn0000246. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime