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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0000251 through 18771 annotations produced 1 hits



caudal (cad):

Annotation Number : CG1759
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0000251
Gbrowse : chr2L:20770893-20783132 (+) // 100.0 //
Probeset : 1635796_a_at
Accessions : protein= NP_476954; /// NP_599128;, nucleotide= NM_057606; /// NM_134301;
Pathway : DNA-dependent // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred fr
Interpro : 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // non-traceable author statement /// 0005634 //
FlyMine data for FBgn0000251.
BDGP gene expression has embryonic in situ data for cad: 84 pix of staining in 16 body parts.
Homophila reports that CG1759 is a close match (6e-12) to human gene HOXD4;HOX4B (NP_055436), a gene associated with {Leukemia, acute lymphoblastic, susceptibility to} (3).
BioGrid reports that CG1759 interacts with CG32647 CG1883 CG2199 CG31140 CG4068 CG4491 Dmel CG34168 CG6533 CG6637 CG6933 CG7765 CG8280 .
VDRC has 3 RNAi stocks for FBgn0000251 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 11 of 4 0.00Down
Head3 11 of 4 0.00Down
Eye3 11 of 4 0.01Down
Thoracicoabdominal ganglion15 24 of 4 0.00Down
Salivary gland6 20 of 4 0.01Down
Crop5 10 of 4 0.00Down
Midgut380 154 of 4 0.70Down
Tubule3039 1284 of 4 6.00Up
Hindgut441 194 of 4 0.90Down
Heart6 23 of 4 0.01Down
Fat body18 193 of 4 0.04Down
Ovary1270 144 of 4 2.50Up
Testis315 134 of 4 0.60Down
Male accessory glands3 21 of 4 0.00Down
Virgin spermatheca18 34 of 4 0.04Down
Mated spermatheca9 42 of 4 0.02Down
Adult carcass22 62 of 4 0.00Down
Larval CNS5 22 of 4 0.01Down
Larval Salivary gland3 10 of 4 0.01Down
Larval midgut470 124 of 4 0.92None
Larval tubule2082 184 of 4 4.10Up
Larval hindgut518 234 of 4 1.02None
Larval fat body65 304 of 4 0.10Down
Larval trachea4 52 of 4 0.01Down
Larval carcass37 24 of 4 0.07Down
S2 cells (growing)4 11 of 4 0.01Down
Whole fly509 104 of 4

Looking for FBgn0000251. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime