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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0000253 through 18771 annotations produced 1 hits



calmodulin (Cam):

Annotation Number : CG8472
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0000253
Gbrowse : chr2R:8146912-8162130 (+) // 100.0 //
Probeset : 1623682_a_at
Accessions : protein= NP_523710; /// NP_725120;, nucleotide= NM_078986; /// NM_165870;
Pathway : 0000922 // spindle pole // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005875
Interpro : 0005509 // calcium ion binding // inferred from electronic annotation /// 0005509 // calcium ion binding // non-traceabl
FlyMine data for FBgn0000253.
BDGP gene expression has embryonic in situ data for Cam: 25 pix of staining in 25 body parts.
Homophila reports that CG8472 is a close match (3e-11) to human gene ACTN2;CMD1AA (NP_001094), a gene associated with Cardiomyopathy, dilated, 1AA, 612158 (3).
BioGrid reports that CG8472 interacts with CG8840 CG9285 CG9392 CG9705 CG6571 .
TRiP has 1 RNAi stocks for FBgn0000253 available for purchase.
VDRC has 2 RNAi stocks for FBgn0000253 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2531 904 of 4 1.60Up
Head2851 874 of 4 1.80Up
Eye5281 624 of 4 3.31Up
Thoracicoabdominal ganglion2879 344 of 4 1.80Up
Salivary gland1765 714 of 4 1.10None
Crop1847 334 of 4 1.20Up
Midgut2804 1054 of 4 1.80Up
Tubule915 514 of 4 0.60Down
Hindgut2002 414 of 4 1.30Up
Heart1537 804 of 4 0.96None
Fat body1834 1024 of 4 1.15Up
Ovary1775 394 of 4 1.10None
Testis1445 744 of 4 0.90None
Male accessory glands1511 164 of 4 0.90None
Virgin spermatheca1779 784 of 4 1.11None
Mated spermatheca1397 624 of 4 0.87None
Adult carcass1168 364 of 4 0.70Down
Larval CNS2112 814 of 4 1.32Up
Larval Salivary gland2378 1244 of 4 1.49Up
Larval midgut3199 1564 of 4 2.00Up
Larval tubule2228 884 of 4 1.40Up
Larval hindgut2650 424 of 4 1.66Up
Larval fat body2782 2154 of 4 1.70Up
Larval trachea2134 1514 of 4 1.34Up
Larval carcass2363 1384 of 4 1.48Up
S2 cells (growing)1970 424 of 4 1.23Up
Whole fly1597 634 of 4

Looking for FBgn0000253. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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