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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0000256 through 18771 annotations produced 1 hits



cappuccino (capu):

Annotation Number : CG3399
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0000256
Gbrowse : chr2L:3872657-3902860 (-) // 100.0 //
Probeset : 1637398_a_at
Accessions : protein= NP_001137783; /// NP_001137784; /// NP_001137785; /// NP_001137786; /// NP_001137787; /// NP_476966; /// NP_722950; /// NP_722951; /// NP_722952;, nucleotide= NM_001144311; /// NM_001144312; /// NM_001144313; /// NM_001144314; /// NM_001144315; /// NM_057618; /// NM_164565; /// NM_164566; /// NM_164567;
Pathway : 0005737 // cytoplasm // inferred from direct assay /// 0005938 // cell cortex // inferred from direct assay /// 0015629
Interpro : 0003779 // actin binding // inferred from electronic annotation /// 0003779 // actin binding // inferred from sequence o
FlyMine data for FBgn0000256.
BDGP gene expression has embryonic in situ data for capu: 36 pix of staining in 8 body parts.
Homophila reports that CG3399 is a close match (5e-22) to human gene DIA;DIAPH2;POF2 (NP_009293), a gene associated with Premature ovarian failure, 300511 (3).
BioGrid reports that CG3399 interacts with CG6998 CG6338 CG8416 CG9553 CG11387 CG5637 .
TRiP has 1 RNAi stocks for FBgn0000256 available for purchase.
VDRC has 2 RNAi stocks for FBgn0000256 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain224 24 of 4 1.80Up
Head82 74 of 4 0.60Down
Eye142 74 of 4 1.12None
Thoracicoabdominal ganglion234 114 of 4 1.80Up
Salivary gland21 32 of 4 0.16Down
Crop42 34 of 4 0.30Down
Midgut306 24 of 4 2.40Up
Tubule40 24 of 4 0.30Down
Hindgut259 74 of 4 2.00Up
Heart79 44 of 4 0.62Down
Fat body160 84 of 4 1.26Up
Ovary88 14 of 4 0.70Down
Testis1031 294 of 4 8.10Up
Male accessory glands70 64 of 4 0.60Down
Virgin spermatheca116 24 of 4 0.91Down
Mated spermatheca103 64 of 4 0.81Down
Adult carcass73 04 of 4 0.60Down
Larval CNS66 84 of 4 0.52Down
Larval Salivary gland6 21 of 4 0.05Down
Larval midgut213 124 of 4 1.67Up
Larval tubule62 44 of 4 0.50Down
Larval hindgut182 114 of 4 1.43Up
Larval fat body108 264 of 4 0.90None
Larval trachea36 34 of 4 0.29Down
Larval carcass41 34 of 4 0.32Down
S2 cells (growing)392 124 of 4 3.08Up
Whole fly127 34 of 4

Looking for FBgn0000256. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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