FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0000256 through 18771 annotations produced 1 hits

cappuccino (capu):

Annotation Number : CG3399
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0000256
Gbrowse : chr2L:3872657-3902860 (-) // 100.0 //
Probeset : 1637398_a_at
Accessions : protein= NP_001137783; /// NP_001137784; /// NP_001137785; /// NP_001137786; /// NP_001137787; /// NP_476966; /// NP_722950; /// NP_722951; /// NP_722952;, nucleotide= NM_001144311; /// NM_001144312; /// NM_001144313; /// NM_001144314; /// NM_001144315; /// NM_057618; /// NM_164565; /// NM_164566; /// NM_164567;
Pathway : 0005737 // cytoplasm // inferred from direct assay /// 0005938 // cell cortex // inferred from direct assay /// 0015629
Interpro : 0003779 // actin binding // inferred from electronic annotation /// 0003779 // actin binding // inferred from sequence o
FlyMine data for FBgn0000256.
BDGP gene expression has embryonic in situ data for capu: 36 pix of staining in 8 body parts.
Homophila reports that CG3399 is a close match (5e-22) to human gene DIA;DIAPH2;POF2 (NP_009293), a gene associated with Premature ovarian failure, 300511 (3).
BioGrid reports that CG3399 interacts with CG6998 CG6338 CG8416 CG9553 CG11387 CG5637 .
TRiP has 1 RNAi stocks for FBgn0000256 available for purchase.
VDRC has 2 RNAi stocks for FBgn0000256 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	224 ± 2	4 of 4	1.80	Up
Head	82 ± 7	4 of 4	0.60	Down
Eye	142 ± 7	4 of 4	1.12	None
Thoracicoabdominal ganglion	234 ± 11	4 of 4	1.80	Up
Salivary gland	21 ± 3	2 of 4	0.16	Down
Crop	42 ± 3	4 of 4	0.30	Down
Midgut	306 ± 2	4 of 4	2.40	Up
Tubule	40 ± 2	4 of 4	0.30	Down
Hindgut	259 ± 7	4 of 4	2.00	Up
Heart	79 ± 4	4 of 4	0.62	Down
Fat body	160 ± 8	4 of 4	1.26	Up
Ovary	88 ± 1	4 of 4	0.70	Down
Testis	1031 ± 29	4 of 4	8.10	Up
Male accessory glands	70 ± 6	4 of 4	0.60	Down
Virgin spermatheca	116 ± 2	4 of 4	0.91	Down
Mated spermatheca	103 ± 6	4 of 4	0.81	Down
Adult carcass	73 ± 0	4 of 4	0.60	Down
Larval CNS	66 ± 8	4 of 4	0.52	Down
Larval Salivary gland	6 ± 2	1 of 4	0.05	Down
Larval midgut	213 ± 12	4 of 4	1.67	Up
Larval tubule	62 ± 4	4 of 4	0.50	Down
Larval hindgut	182 ± 11	4 of 4	1.43	Up
Larval fat body	108 ± 26	4 of 4	0.90	None
Larval trachea	36 ± 3	4 of 4	0.29	Down
Larval carcass	41 ± 3	4 of 4	0.32	Down
S2 cells (growing)	392 ± 12	4 of 4	3.08	Up
Whole fly	127 ± 3	4 of 4

Looking for FBgn0000256. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720