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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0000278 through 18771 annotations produced 1 hits



Cecropin B (CecB):

Annotation Number : CG1878
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0000278
Gbrowse : chr3R:26039197-26039447 (-) // 100.0 //
Probeset : 1626530_at
Accessions : protein= NP_524590;, nucleotide= NM_079851;
Pathway : 0005576 // extracellular region // inferred from direct assay /// 0005576 // extracellular region // inferred from elect
FlyMine data for FBgn0000278.
VDRC has 2 RNAi stocks for FBgn0000278 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain12 ± 21 of 4 0.60Down
Head67 ± 324 of 4 3.20None
Eye61 ± 264 of 4 2.89None
Thoracicoabdominal ganglion8 ± 30 of 4 0.40Down
Salivary gland87 ± 134 of 4 4.11Up
Crop23 ± 11 of 4 1.10None
Midgut14 ± 20 of 4 0.70None
Tubule14 ± 20 of 4 0.70Down
Hindgut23 ± 63 of 4 1.10None
Heart65 ± 144 of 4 3.06None
Fat body35 ± 271 of 4 1.68None
Ovary13 ± 21 of 4 0.70Down
Testis6 ± 10 of 4 0.30Down
Male accessory glands10 ± 30 of 4 0.50Down
Virgin spermatheca21 ± 30 of 4 0.99None
Mated spermatheca33 ± 52 of 4 1.57None
Adult carcass57 ± 83 of 4 2.70Up
Larval CNS23 ± 24 of 4 1.10None
Larval Salivary gland62 ± 223 of 4 2.92None
Larval midgut17 ± 30 of 4 0.81None
Larval tubule22 ± 13 of 4 1.00None
Larval hindgut38 ± 34 of 4 1.78Up
Larval fat body53 ± 193 of 4 2.50None
Larval trachea63 ± 533 of 4 2.97None
Larval carcass98 ± 94 of 4 4.60Up
S2 cells (growing)92 ± 34 of 4 4.34Up
Whole fly21 ± 13 of 4

Looking for FBgn0000278. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime