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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0000283 through 18771 annotations produced 1 hits



Centrosomal protein 190kD (Cp190):

Annotation Number : CG6384
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0000283
Gbrowse : chr3R:11096145-11100927 (-) // 100.0 //
Probeset : 1631940_s_at
Accessions : protein= NP_524359; /// NP_731998;, nucleotide= NM_079635; /// NM_169632;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay ///
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from direc
FlyMine data for FBgn0000283.
BioGrid reports that CG6384 interacts with CG1825 .
TRiP has 3 RNAi stocks for FBgn0000283 available for purchase.
VDRC has 3 RNAi stocks for FBgn0000283 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain558 ± 314 of 4 1.50Up
Head255 ± 84 of 4 0.70Down
Eye276 ± 84 of 4 0.73None
Thoracicoabdominal ganglion327 ± 74 of 4 0.90None
Salivary gland366 ± 254 of 4 0.97None
Crop295 ± 114 of 4 0.80None
Midgut215 ± 94 of 4 0.60Down
Tubule382 ± 74 of 4 1.00None
Hindgut230 ± 64 of 4 0.60Down
Heart236 ± 84 of 4 0.63Down
Fat body193 ± 154 of 4 0.52Down
Ovary999 ± 114 of 4 2.70Up
Testis80 ± 34 of 4 0.20Down
Male accessory glands231 ± 24 of 4 0.60Down
Virgin spermatheca226 ± 154 of 4 0.60Down
Mated spermatheca246 ± 184 of 4 0.66Down
Adult carcass204 ± 84 of 4 0.50Down
Larval CNS803 ± 454 of 4 2.14Up
Larval Salivary gland573 ± 204 of 4 1.52Up
Larval midgut185 ± 84 of 4 0.49Down
Larval tubule227 ± 34 of 4 0.60Down
Larval hindgut234 ± 34 of 4 0.62Down
Larval fat body225 ± 184 of 4 0.60Down
Larval trachea494 ± 154 of 4 1.32Up
Larval carcass284 ± 64 of 4 0.76None
S2 cells (growing)681 ± 214 of 4 1.81Up
Whole fly376 ± 344 of 4

Looking for FBgn0000283. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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