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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0000308 through 18771 annotations produced 1 hits



chr2L:5973139-5981023 (-) // 100.0 // (chickadee):

Annotation Number : CG9553
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1640251_s_at
Accessions : protein= , nucleotide= NP_477016; /// NP_599131; /// NP_723136; /// NP_995635;
Pathway : "0000902 // cell morphogenesis // inferred from mutant phenotype /// 0000910 // cytokinesis // inferred from mutant phen
Interpro : actomyosin contractile ring assembly // traceable author statement /// 0007010 // cytoskeleton organization // inferred
FlyMine data for full length.
BioGrid reports that CG9553 interacts with CG3399 CG4032 CG12530 CG3510 CG2248 CG9375 CG4944 CG4353 CG4353 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain886 ± 114 of 4 1.00None
Head924 ± 694 of 4 1.10None
Eye1871 ± 544 of 4 2.15Up
Thoracicoabdominal ganglion867 ± 164 of 4 1.00None
Salivary gland1043 ± 684 of 4 1.20None
Crop2177 ± 754 of 4 2.50Up
Midgut1440 ± 504 of 4 1.70Up
Tubule1063 ± 424 of 4 1.20Up
Hindgut1218 ± 284 of 4 1.40Up
Heart1439 ± 504 of 4 1.66Up
Fat body505 ± 944 of 4 0.58Down
Ovary1038 ± 174 of 4 1.20Up
Testis725 ± 414 of 4 0.80Down
Male accessory glands1394 ± 324 of 4 1.60Up
Virgin spermatheca771 ± 534 of 4 0.89None
Mated spermatheca947 ± 634 of 4 1.09None
Adult carcass708 ± 374 of 4 0.80Down
Larval CNS1958 ± 464 of 4 2.25Up
Larval Salivary gland3458 ± 484 of 4 3.98Up
Larval midgut3262 ± 1214 of 4 3.75Up
Larval tubule2555 ± 694 of 4 2.90Up
Larval hindgut2547 ± 554 of 4 2.93Up
Larval fat body2761 ± 2264 of 4 3.20Up
Larval trachea2626 ± 2894 of 4 3.02Up
Larval carcass3396 ± 1604 of 4 3.91Up
S2 cells (growing)2328 ± 194 of 4 2.68Up
Whole fly869 ± 264 of 4

Looking for FBgn0000308. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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