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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0000319 through 18771 annotations produced 1 hits



clathrin (Chc):

Annotation Number : CG9012
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0000319
Gbrowse : chrX:15722018-15729507 (-) // 100.0 //
Probeset : 1639985_s_at
Accessions : protein= NP_001096993; /// NP_001096994; /// NP_477042; /// NP_727901; /// NP_996451; /// NP_996452;, nucleotide= NM_001103523; /// NM_001103524; /// NM_057694; /// NM_167466; /// NM_206728; /// NM_206729;
Pathway : open tracheal system // inferred from mutant phenotype /// 0035159 // regulation of tube length
Interpro : open tracheal system // inferred from mutant phenotype"
FlyMine data for FBgn0000319.
BioGrid reports that CG9012 interacts with CG1945 CG8532 CG4889 .
TRiP has 2 RNAi stocks for FBgn0000319 available for purchase.
VDRC has 3 RNAi stocks for FBgn0000319 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1059 164 of 4 1.50Up
Head812 234 of 4 1.20Up
Eye892 344 of 4 1.26Up
Thoracicoabdominal ganglion1224 434 of 4 1.70Up
Salivary gland1220 404 of 4 1.73Up
Crop1013 234 of 4 1.40Up
Midgut945 244 of 4 1.30Up
Tubule1954 484 of 4 2.80Up
Hindgut1404 224 of 4 2.00Up
Heart1984 564 of 4 2.81Up
Fat body840 794 of 4 1.19Up
Ovary861 354 of 4 1.20Up
Testis276 94 of 4 0.40Down
Male accessory glands940 164 of 4 1.30Up
Virgin spermatheca1315 474 of 4 1.86Up
Mated spermatheca1314 294 of 4 1.86Up
Adult carcass782 274 of 4 1.10None
Larval CNS1029 304 of 4 1.46Up
Larval Salivary gland2824 394 of 4 4.00Up
Larval midgut1324 114 of 4 1.88Up
Larval tubule1818 84 of 4 2.60Up
Larval hindgut1425 244 of 4 2.02Up
Larval fat body1196 944 of 4 1.70Up
Larval trachea1332 1034 of 4 1.89Up
Larval carcass1146 424 of 4 1.62Up
S2 cells (growing)1746 414 of 4 2.47Up
Whole fly706 144 of 4

Looking for FBgn0000319. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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