FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0000320 through 18771 annotations produced 1 hits

clift (eya):

Annotation Number : CG9554
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0000320
Gbrowse : chr2L:6527448-6546972 (-) // 100.0 //
Probeset : 1623206_a_at
Accessions : protein= NP_523492; /// NP_723188;, nucleotide= NM_078768; /// NM_164693;
Pathway : 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // non-traceable author statement /// 0005634 //
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004721 // phosphoprotein phosphatase activity
FlyMine data for FBgn0000320.
BDGP gene expression has embryonic in situ data for eya: 38 pix of staining in 20 body parts.
Homophila reports that CG9554 is a close match (1e-88) to human gene EYA1;BOR (NP_742056), a gene associated with Anterior segment anomalies and cataract (3);Branchiootic syndrome (3);Branchiootorenal syndrome with cataract, 113650 (3);Branchiootorenal syndrome, 113650 (3);Otofaciocervical syndrome, 166780 (3).
BioGrid reports that CG9554 interacts with CG3166 CG10079 CG12399 CG9375 CG9375 CG4952 CG4952 CG4952 CG4952 CG4952 CG4952 CG9885 CG9885 CG1464 CG1464 CG1464 CG1464 CG1464 CG1464 CG1464 CG1464 CG2845 CG12559 CG12559 CG11121 CG11121 CG11121 CG11121 CG11121 CG11121 CG11121 CG11121 CG11121 CG11121 CG1374 .
TRiP has 2 RNAi stocks for FBgn0000320 available for purchase.
VDRC has 2 RNAi stocks for FBgn0000320 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	19 ± 2	4 of 4	0.50	Down
Head	153 ± 6	4 of 4	4.40	Up
Eye	325 ± 3	4 of 4	9.30	Up
Thoracicoabdominal ganglion	9 ± 1	3 of 4	0.30	Down
Salivary gland	6 ± 1	0 of 4	0.19	Down
Crop	1 ± 0	0 of 4	0.00	Down
Midgut	2 ± 1	0 of 4	0.10	Down
Tubule	4 ± 1	0 of 4	0.10	Down
Hindgut	1 ± 0	0 of 4	0.00	Down
Heart	2 ± 0	0 of 4	0.07	Down
Fat body	6 ± 3	3 of 4	0.20	Down
Ovary	44 ± 2	4 of 4	1.30	None
Testis	89 ± 9	4 of 4	2.60	Up
Male accessory glands	0 ± 0	0 of 4	0.00	Down
Virgin spermatheca	1 ± 0	0 of 4	0.03	Down
Mated spermatheca	2 ± 1	0 of 4	0.07	Down
Adult carcass	14 ± 1	3 of 4	0.40	Down
Larval CNS	135 ± 28	4 of 4	3.86	Up
Larval Salivary gland	3 ± 1	0 of 4	0.10	Down
Larval midgut	4 ± 2	1 of 4	0.12	Down
Larval tubule	8 ± 1	3 of 4	0.20	Down
Larval hindgut	2 ± 1	1 of 4	0.08	Down
Larval fat body	33 ± 2	4 of 4	1.00	None
Larval trachea	8 ± 4	4 of 4	0.25	Down
Larval carcass	9 ± 0	4 of 4	0.28	Down
S2 cells (growing)	1 ± 0	0 of 4	0.05	Down
Whole fly	35 ± 3	4 of 4

Looking for FBgn0000320. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720