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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0000326 through 18771 annotations produced 1 hits



JHE-related (clt):

Annotation Number : CG9858
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0000326
Gbrowse : chr2R:17504560-17506564 (-) // 100.0 //
Probeset : 1640257_at
Accessions : protein= NP_536784;, nucleotide= NM_080523;
Interpro : 0004091 // carboxylesterase activity // inferred from sequence or structural similarity /// 0004091 // carboxylesterase
FlyMine data for FBgn0000326.
BDGP gene expression has embryonic in situ data for clt: 4 pix of staining in 1 body parts.
Homophila reports that CG9858 is a close match (4e-20) to human gene AITD3;TG (NP_003226), a gene associated with Goiter, adolescent multinodular (1);Goiter, nonendemic, simple (3);Hypothyroidism, hereditary congenital (3);{Autoimmune thyroid disease, susceptibility to 3}, 608175 (3).


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain76 ± 54 of 4 1.10Up
Head100 ± 84 of 4 1.50Up
Eye83 ± 14 of 4 1.27Up
Thoracicoabdominal ganglion132 ± 34 of 4 2.00Up
Salivary gland57 ± 64 of 4 0.87None
Crop141 ± 34 of 4 2.10Up
Midgut126 ± 84 of 4 1.90Up
Tubule99 ± 54 of 4 1.50Up
Hindgut86 ± 34 of 4 1.30Up
Heart168 ± 34 of 4 2.54Up
Fat body202 ± 204 of 4 3.06Up
Ovary62 ± 34 of 4 1.00None
Testis14 ± 13 of 4 0.20Down
Male accessory glands23 ± 33 of 4 0.40Down
Virgin spermatheca115 ± 44 of 4 1.75Up
Mated spermatheca113 ± 84 of 4 1.71Up
Adult carcass140 ± 54 of 4 2.10Up
Larval CNS50 ± 84 of 4 0.76Down
Larval Salivary gland40 ± 44 of 4 0.61Down
Larval midgut141 ± 44 of 4 2.14Up
Larval tubule79 ± 24 of 4 1.20Up
Larval hindgut82 ± 74 of 4 1.25None
Larval fat body137 ± 204 of 4 2.10Up
Larval trachea79 ± 04 of 4 1.20Up
Larval carcass91 ± 44 of 4 1.38Up
S2 cells (growing)81 ± 24 of 4 1.23Up
Whole fly66 ± 34 of 4

Looking for FBgn0000326. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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