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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0000337 through 18771 annotations produced 1 hits



cinnabar (cn):

Annotation Number : CG1555
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0000337
Gbrowse : chr2R:3670301-3672711 (-) // 100.0 //
Probeset : 1631012_at
Accessions : protein= NP_523651;, nucleotide= NM_078927;
Pathway : 0005739 // mitochondrion // inferred from electronic annotation /// 0005741 // mitochondrial outer membrane // inferred
Interpro : 0004497 // monooxygenase activity // inferred from electronic annotation /// 0004502 // kynurenine 3-monooxygenase activ
FlyMine data for FBgn0000337.
BDGP gene expression has embryonic in situ data for cn: 18 pix of staining in 4 body parts.
VDRC has 2 RNAi stocks for FBgn0000337 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 ± 00 of 4 1.40None
Head1 ± 00 of 4 2.80None
Eye3 ± 10 of 4 7.06None
Thoracicoabdominal ganglion0 ± 00 of 4 2.20None
Salivary gland4 ± 20 of 411.24None
Crop0 ± 00 of 4 0.90None
Midgut0 ± 00 of 4 1.50None
Tubule1 ± 00 of 4 2.60Up
Hindgut0 ± 00 of 4 0.70None
Heart0 ± 00 of 4 2.18None
Fat body2 ± 10 of 4 5.53None
Ovary0 ± 00 of 4 0.80None
Testis1 ± 00 of 4 3.80None
Male accessory glands1 ± 00 of 4 3.50None
Virgin spermatheca0 ± 00 of 4 1.71None
Mated spermatheca0 ± 00 of 4 1.65None
Adult carcass3 ± 10 of 4 7.40None
Larval CNS1 ± 00 of 4 2.53None
Larval Salivary gland0 ± 00 of 4 1.76None
Larval midgut3 ± 10 of 4 7.76None
Larval tubule1 ± 00 of 4 3.10None
Larval hindgut0 ± 00 of 4 1.41None
Larval fat body3 ± 20 of 4 8.90None
Larval trachea0 ± 00 of 4 1.94None
Larval carcass1 ± 10 of 4 3.76None
S2 cells (growing)2 ± 00 of 4 6.18Up
Whole fly0 ± 00 of 4

Looking for FBgn0000337. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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