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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0000339 through 18771 annotations produced 1 hits



chr2L:16309593-16310736 (-) // 100.0 // (spindle-G):

Annotation Number : CG5855
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1633961_s_at
Accessions : protein= , nucleotide= NP_477068; /// NP_723959;
Pathway : "0006888 // ER to Golgi vesicle-mediated transport // inferred from mutant phenotype /// 0007275 // multicellular organi
Interpro : ovarian follicular epithelium // non-traceable author statement /// 0008298 // intracellular mRNA localization // infer
FlyMine data for full length.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain392 ± 34 of 4 1.00None
Head470 ± 244 of 4 1.20None
Eye691 ± 284 of 4 1.72Up
Thoracicoabdominal ganglion352 ± 54 of 4 0.90None
Salivary gland371 ± 134 of 4 0.92None
Crop401 ± 74 of 4 1.00None
Midgut1100 ± 284 of 4 2.70Up
Tubule916 ± 114 of 4 2.30Up
Hindgut811 ± 224 of 4 2.00Up
Heart657 ± 84 of 4 1.64Up
Fat body682 ± 614 of 4 1.70Up
Ovary409 ± 134 of 4 1.00None
Testis391 ± 114 of 4 1.00None
Male accessory glands223 ± 84 of 4 0.60Down
Virgin spermatheca237 ± 114 of 4 0.59Down
Mated spermatheca262 ± 104 of 4 0.65Down
Adult carcass551 ± 154 of 4 1.40Up
Larval CNS507 ± 134 of 4 1.26Up
Larval Salivary gland551 ± 384 of 4 1.37Up
Larval midgut929 ± 364 of 4 2.31Up
Larval tubule1386 ± 84 of 4 3.50Up
Larval hindgut740 ± 194 of 4 1.84Up
Larval fat body769 ± 664 of 4 1.90Up
Larval trachea648 ± 374 of 4 1.62Up
Larval carcass722 ± 324 of 4 1.80Up
S2 cells (growing)656 ± 114 of 4 1.63Up
Whole fly401 ± 304 of 4

Looking for FBgn0000339. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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