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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0000355 through 18771 annotations produced 1 hits



s15 chorion gene (Cp15):

Annotation Number : CG6519
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0000355
Gbrowse : chr3L:8721626-8722045 (+) // 100.0 //
Probeset : 1623044_at
Accessions : protein= NP_523979;, nucleotide= NM_079255;
Pathway : 0005576 // extracellular region // inferred from electronic annotation /// 0042600 // chorion // inferred from electroni
Interpro : 0005213 // structural constituent of chorion // non-traceable author statement
FlyMine data for FBgn0000355.
BioGrid reports that CG6519 interacts with CG7347 CG8095 CG9121 .
VDRC has 1 RNAi stocks for FBgn0000355 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.00Down
Head5 10 of 4 0.00Down
Eye3 00 of 4 0.00Down
Thoracicoabdominal ganglion11 31 of 4 0.00Down
Salivary gland31 201 of 4 0.01Down
Crop8 20 of 4 0.00Down
Midgut10 00 of 4 0.00Down
Tubule8 00 of 4 0.00Down
Hindgut7 20 of 4 0.00Down
Heart21 121 of 4 0.01Down
Fat body37 162 of 4 0.01Down
Ovary3218 1224 of 4 1.00None
Testis51 64 of 4 0.00Down
Male accessory glands13 40 of 4 0.00Down
Virgin spermatheca14 91 of 4 0.00Down
Mated spermatheca5 00 of 4 0.00Down
Adult carcass70 242 of 4 0.00Down
Larval CNS3 20 of 4 0.00Down
Larval Salivary gland11 20 of 4 0.00Down
Larval midgut19 30 of 4 0.01Down
Larval tubule8 10 of 4 0.00Down
Larval hindgut8 30 of 4 0.00Down
Larval fat body12 30 of 4 0.00Down
Larval trachea8 40 of 4 0.00Down
Larval carcass8 00 of 4 0.00Down
S2 cells (growing)5 00 of 4 0.00Down
Whole fly3367 5994 of 4

Looking for FBgn0000355. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime