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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0000356 through 18771 annotations produced 1 hits



Chorion protein 16 (Cp16):

Annotation Number : CG6533
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0000356
Gbrowse : chr3L:8725090-8725641 (+) // 100.0 //
Probeset : 1629380_at
Accessions : protein= NP_523981;, nucleotide= NM_079257;
Pathway : 0005576 // extracellular region // inferred from electronic annotation /// 0042600 // chorion // inferred from electroni
Interpro : 0005213 // structural constituent of chorion // non-traceable author statement /// 0005515 // protein binding // inferre
FlyMine data for FBgn0000356.
BioGrid reports that CG6533 interacts with CG9392 .
VDRC has 3 RNAi stocks for FBgn0000356 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 00 of 4 0.00Down
Head1 00 of 4 0.00Down
Eye3 00 of 4 0.00Down
Thoracicoabdominal ganglion1 00 of 4 0.00Down
Salivary gland4 10 of 4 0.00Down
Crop1 00 of 4 0.00Down
Midgut1 00 of 4 0.00Down
Tubule1 00 of 4 0.00Down
Hindgut1 00 of 4 0.00Down
Heart2 10 of 4 0.00Down
Fat body16 291 of 4 0.01Down
Ovary2891 1594 of 4 1.80Up
Testis2 10 of 4 0.00Down
Male accessory glands2 00 of 4 0.00Down
Virgin spermatheca5 30 of 4 0.00Down
Mated spermatheca0 00 of 4 0.00Down
Adult carcass29 271 of 4 0.00Down
Larval CNS0 00 of 4 0.00Down
Larval Salivary gland1 00 of 4 0.00Down
Larval midgut5 30 of 4 0.00Down
Larval tubule1 00 of 4 0.00Down
Larval hindgut1 00 of 4 0.00Down
Larval fat body2 00 of 4 0.00Down
Larval trachea3 20 of 4 0.00Down
Larval carcass1 00 of 4 0.00Down
S2 cells (growing)0 00 of 4 0.00Down
Whole fly1621 3624 of 4

Looking for FBgn0000356. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime