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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0000360 through 18771 annotations produced 1 hits


Shell-38 (Cp38):

Annotation Number : CG11213
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0000360
Gbrowse : chrX:8375946-8377093 (+) // 100.0 //
Probeset : 1626103_at
Accessions : protein= NP_001162703; /// NP_511088;, nucleotide= NM_001169232; /// NM_078533;
Interpro : 0005213 // structural constituent of chorion // non-traceable author statement /// 0005515 // protein binding // inferre
FlyMine data for FBgn0000360.
BioGrid reports that CG11213 interacts with CG12470 CG2261 CG3114 CG3680 CG11271 CG11674 CG11956 CG13272 CG13458 CG13614 CG13728 CG17520 CG17666 CG18228 CG1877 CG2184 CG31738 CG3193 CG31973 CG4591 CG5562 CG5920 CG6238 CG6779 CG7017 CG7057 CG7349 CG7611 CG8427 CG8679 CG9036 CG9184 CG9467 CG9769 .
VDRC has 2 RNAi stocks for FBgn0000360 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 10 of 4 0.00Down
Head3 ± 00 of 4 0.00Down
Eye4 ± 20 of 4 0.00Down
Thoracicoabdominal ganglion3 ± 10 of 4 0.00Down
Salivary gland15 ± 60 of 4 0.01Down
Crop12 ± 20 of 4 0.00Down
Midgut4 ± 10 of 4 0.00Down
Tubule7 ± 30 of 4 0.00Down
Hindgut18 ± 131 of 4 0.00Down
Heart2 ± 10 of 4 0.00Down
Fat body5 ± 30 of 4 0.00Down
Ovary2938 ± 1154 of 4 1.30None
Testis1 ± 00 of 4 0.00Down
Male accessory glands3 ± 00 of 4 0.00Down
Virgin spermatheca5 ± 00 of 4 0.00Down
Mated spermatheca4 ± 20 of 4 0.00Down
Adult carcass114 ± 713 of 4 0.00Down
Larval CNS4 ± 20 of 4 0.00Down
Larval Salivary gland2 ± 00 of 4 0.00Down
Larval midgut11 ± 30 of 4 0.00Down
Larval tubule6 ± 10 of 4 0.00Down
Larval hindgut3 ± 00 of 4 0.00Down
Larval fat body7 ± 20 of 4 0.00Down
Larval trachea2 ± 10 of 4 0.00Down
Larval carcass7 ± 20 of 4 0.00Down
S2 cells (growing)2 ± 00 of 4 0.00Down
Whole fly2312 ± 3734 of 4

Looking for FBgn0000360. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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