FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0000370 through 18771 annotations produced 1 hits

cryptocephal (crc):

Annotation Number : CG8669
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0000370
Gbrowse : chr2L:21310853-21319536 (+) // 100.0 //
Probeset : 1631565_a_at
Accessions : protein= NP_001033930; /// NP_524897; /// NP_724333;, nucleotide= NM_001038841; /// NM_080158; /// NM_165374;
Pathway : DNA-dependent // inferred from electronic annotation /// 0007552 // metamorphosis // inferred from mutant phenotype ///
Interpro : chitin-based cuticle // inferred from mutant phenotype /// 0032583 // regulation of gene-specific transcription // infe
FlyMine data for FBgn0000370.
BDGP gene expression has embryonic in situ data for crc: 11 pix of staining in 2 body parts.
BioGrid reports that CG8669 interacts with CG9331 .
TRiP has 2 RNAi stocks for FBgn0000370 available for purchase.
VDRC has 3 RNAi stocks for FBgn0000370 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	1518 ± 34	4 of 4	1.00	None
Head	2886 ± 103	4 of 4	2.00	Up
Eye	5270 ± 128	4 of 4	3.62	Up
Thoracicoabdominal ganglion	2039 ± 80	4 of 4	1.40	Up
Salivary gland	7228 ± 108	4 of 4	4.96	Up
Crop	3586 ± 132	4 of 4	2.50	Up
Midgut	1593 ± 22	4 of 4	1.10	None
Tubule	2703 ± 137	4 of 4	1.90	Up
Hindgut	2492 ± 74	4 of 4	1.70	Up
Heart	2659 ± 141	4 of 4	1.83	Up
Fat body	2941 ± 269	4 of 4	2.02	Up
Ovary	911 ± 18	4 of 4	0.60	Down
Testis	637 ± 24	4 of 4	0.40	Down
Male accessory glands	2641 ± 75	4 of 4	1.80	Up
Virgin spermatheca	3094 ± 83	4 of 4	2.12	Up
Mated spermatheca	2846 ± 120	4 of 4	1.95	Up
Adult carcass	2524 ± 47	4 of 4	1.70	Up
Larval CNS	1729 ± 64	4 of 4	1.19	Up
Larval Salivary gland	3852 ± 102	4 of 4	2.64	Up
Larval midgut	2112 ± 27	4 of 4	1.45	Up
Larval tubule	2375 ± 45	4 of 4	1.60	Up
Larval hindgut	2989 ± 29	4 of 4	2.05	Up
Larval fat body	3452 ± 260	4 of 4	2.40	Up
Larval trachea	3868 ± 126	4 of 4	2.65	Up
Larval carcass	3147 ± 131	4 of 4	2.16	Up
S2 cells (growing)	2776 ± 22	4 of 4	1.91	Up
Whole fly	1457 ± 84	4 of 4

Looking for FBgn0000370. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720