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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0000370 through 18771 annotations produced 1 hits



cryptocephal (crc):

Annotation Number : CG8669
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0000370
Gbrowse : chr2L:21310853-21319536 (+) // 100.0 //
Probeset : 1631565_a_at
Accessions : protein= NP_001033930; /// NP_524897; /// NP_724333;, nucleotide= NM_001038841; /// NM_080158; /// NM_165374;
Pathway : DNA-dependent // inferred from electronic annotation /// 0007552 // metamorphosis // inferred from mutant phenotype ///
Interpro : chitin-based cuticle // inferred from mutant phenotype /// 0032583 // regulation of gene-specific transcription // infe
FlyMine data for FBgn0000370.
BDGP gene expression has embryonic in situ data for crc: 11 pix of staining in 2 body parts.
BioGrid reports that CG8669 interacts with CG9331 .
TRiP has 2 RNAi stocks for FBgn0000370 available for purchase.
VDRC has 3 RNAi stocks for FBgn0000370 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1518 344 of 4 1.00None
Head2886 1034 of 4 2.00Up
Eye5270 1284 of 4 3.62Up
Thoracicoabdominal ganglion2039 804 of 4 1.40Up
Salivary gland7228 1084 of 4 4.96Up
Crop3586 1324 of 4 2.50Up
Midgut1593 224 of 4 1.10None
Tubule2703 1374 of 4 1.90Up
Hindgut2492 744 of 4 1.70Up
Heart2659 1414 of 4 1.83Up
Fat body2941 2694 of 4 2.02Up
Ovary911 184 of 4 0.60Down
Testis637 244 of 4 0.40Down
Male accessory glands2641 754 of 4 1.80Up
Virgin spermatheca3094 834 of 4 2.12Up
Mated spermatheca2846 1204 of 4 1.95Up
Adult carcass2524 474 of 4 1.70Up
Larval CNS1729 644 of 4 1.19Up
Larval Salivary gland3852 1024 of 4 2.64Up
Larval midgut2112 274 of 4 1.45Up
Larval tubule2375 454 of 4 1.60Up
Larval hindgut2989 294 of 4 2.05Up
Larval fat body3452 2604 of 4 2.40Up
Larval trachea3868 1264 of 4 2.65Up
Larval carcass3147 1314 of 4 2.16Up
S2 cells (growing)2776 224 of 4 1.91Up
Whole fly1457 844 of 4

Looking for FBgn0000370. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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