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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0000377 through 18771 annotations produced 1 hits



yolky (crn):

Annotation Number : CG3193
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0000377
Gbrowse : chrX:2141609-2144014 (-) // 100.0 //
Probeset : 1635659_at
Accessions : protein= NP_477118;, nucleotide= NM_057770;
Pathway : via spliceosome // inferred from mutant phenotype /// 0000398 // nuclear mRNA splicing
Interpro : via spliceosome // inferred by curator /// 0000398 // nuclear mRNA splicing
FlyMine data for FBgn0000377.
BDGP gene expression has embryonic in situ data for crn: 4 pix of staining in 1 body parts.
BioGrid reports that CG3193 interacts with CG4148 CG5009 CG5140 CG6290 CG6905 CG8383 CG33017 CG3508 CG4076 CG5111 CG5272 CG5410 CG5792 CG6251 CG6544 CG6652 CG6755 CG6856 CG8264 CG8332 CG8548 CG9173 CG9924 CG10388 .
TRiP has 1 RNAi stocks for FBgn0000377 available for purchase.
VDRC has 8 RNAi stocks for FBgn0000377 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain143 ± 44 of 4 1.20Up
Head111 ± 64 of 4 1.00None
Eye168 ± 94 of 4 1.47Up
Thoracicoabdominal ganglion143 ± 54 of 4 1.30Up
Salivary gland134 ± 94 of 4 1.17None
Crop123 ± 54 of 4 1.10None
Midgut80 ± 44 of 4 0.70Down
Tubule181 ± 54 of 4 1.60Up
Hindgut119 ± 34 of 4 1.00None
Heart100 ± 84 of 4 0.87None
Fat body125 ± 94 of 4 1.09None
Ovary195 ± 44 of 4 1.70Up
Testis30 ± 24 of 4 0.30Down
Male accessory glands160 ± 104 of 4 1.40Up
Virgin spermatheca165 ± 34 of 4 1.44Up
Mated spermatheca176 ± 34 of 4 1.53Up
Adult carcass92 ± 04 of 4 0.80Down
Larval CNS281 ± 104 of 4 2.45Up
Larval Salivary gland132 ± 14 of 4 1.15Up
Larval midgut80 ± 24 of 4 0.70Down
Larval tubule135 ± 74 of 4 1.20None
Larval hindgut115 ± 44 of 4 1.00None
Larval fat body93 ± 114 of 4 0.80None
Larval trachea158 ± 74 of 4 1.38Up
Larval carcass117 ± 44 of 4 1.02None
S2 cells (growing)178 ± 24 of 4 1.55Up
Whole fly115 ± 54 of 4

Looking for FBgn0000377. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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