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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0000382 through 18771 annotations produced 1 hits



chrX:1988268-2007697 (+) // 100.0 // (Enhancer of sevenless 1A):

Annotation Number : CG3954
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1625775_a_at
Accessions : protein= , nucleotide= NP_477130; /// NP_477131; /// NP_726793;
Pathway : "0000278 // mitotic cell cycle // inferred from mutant phenotype /// 0006470 // protein dephosphorylation // inferred fr
Interpro : open tracheal system // inferred from mutant phenotype /// 0007428 // primary branching
FlyMine data for full length.
Homophila reports that CG3954 is a close match (6e-11) to human gene CMAVM;GAP;PKWS;RASA1 (NP_002881), a gene associated with Basal cell carcinoma, somatic (3);Capillary malformation-arteriovenous malformation, 608354 (3);Parkes Weber syndrome, 608355 (3).
BioGrid reports that CG3954 interacts with CG15793 CG10079 CG10079 CG6721 CG9375 CG9375 CG9375 CG9375 CG4385 CG7873 CG7524 CG7524 CG7524 CG7524 CG3411 CG6033 CG9623 CG2899 CG33106 CG17077 CG12559 CG11502 CG11502 CG11502 CG11502 CG1389 CG1044 CG1044 CG1044 CG1044 CG1044 CG1044 CG1044 CG7935 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain392 ± 204 of 4 2.30Up
Head291 ± 84 of 4 1.70Up
Eye268 ± 144 of 4 1.57Up
Thoracicoabdominal ganglion298 ± 244 of 4 1.70Up
Salivary gland243 ± 174 of 4 1.42Up
Crop311 ± 194 of 4 1.80Up
Midgut116 ± 44 of 4 0.70Down
Tubule101 ± 34 of 4 0.60Down
Hindgut328 ± 94 of 4 1.90Up
Heart158 ± 234 of 4 0.93None
Fat body322 ± 254 of 4 1.89Up
Ovary250 ± 14 of 4 1.50Up
Testis34 ± 34 of 4 0.20Down
Male accessory glands251 ± 144 of 4 1.50Up
Virgin spermatheca380 ± 434 of 4 2.23Up
Mated spermatheca372 ± 144 of 4 2.18Up
Adult carcass299 ± 294 of 4 1.80Up
Larval CNS134 ± 54 of 4 0.79Down
Larval Salivary gland150 ± 104 of 4 0.88None
Larval midgut106 ± 104 of 4 0.62Down
Larval tubule120 ± 64 of 4 0.70Down
Larval hindgut207 ± 44 of 4 1.21Up
Larval fat body52 ± 24 of 4 0.30Down
Larval trachea275 ± 404 of 4 1.61Up
Larval carcass140 ± 134 of 4 0.82None
S2 cells (growing)158 ± 44 of 4 0.93None
Whole fly170 ± 74 of 4

Looking for FBgn0000382. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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