FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0000406 through 18771 annotations produced 1 hits

Cytochrome b5-related (Cyt-b5-r):

Annotation Number : CG13279
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0000406
Gbrowse : chr2L:16788856-16790718 (-) // 100.0 //
Probeset : 1632623_at
Accessions : protein= NP_477154;, nucleotide= NM_057806;
Pathway : 0005739 // mitochondrion // inferred from direct assay /// 0005811 // lipid particle // inferred from direct assay
Interpro : "0005506 // iron ion binding // inferred from electronic annotation /// 0009055 // electron carrier activity // non-trac
FlyMine data for FBgn0000406.
BDGP gene expression has embryonic in situ data for Cyt-b5-r: 16 pix of staining in 5 body parts.
BioGrid reports that CG13279 interacts with CG17739 .
VDRC has 3 RNAi stocks for FBgn0000406 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	146 ± 15	4 of 4	0.20	Down
Head	2635 ± 112	4 of 4	3.10	Up
Eye	1981 ± 293	4 of 4	2.31	Up
Thoracicoabdominal ganglion	123 ± 15	4 of 4	0.10	Down
Salivary gland	20 ± 5	1 of 4	0.02	Down
Crop	64 ± 18	4 of 4	0.10	Down
Midgut	41 ± 6	4 of 4	0.00	Down
Tubule	242 ± 45	4 of 4	0.30	Down
Hindgut	441 ± 35	4 of 4	0.50	Down
Heart	4124 ± 364	4 of 4	4.81	Up
Fat body	5125 ± 576	4 of 4	5.98	Up
Ovary	4 ± 1	2 of 4	0.00	Down
Testis	7 ± 0	3 of 4	0.00	Down
Male accessory glands	3 ± 1	0 of 4	0.00	Down
Virgin spermatheca	5086 ± 219	4 of 4	5.94	Up
Mated spermatheca	4644 ± 143	4 of 4	5.42	Up
Adult carcass	4043 ± 136	4 of 4	4.70	Up
Larval CNS	1 ± 1	0 of 4	0.00	Down
Larval Salivary gland	31 ± 4	4 of 4	0.04	Down
Larval midgut	406 ± 72	4 of 4	0.47	Down
Larval tubule	654 ± 45	4 of 4	0.80	None
Larval hindgut	172 ± 46	4 of 4	0.20	Down
Larval fat body	1007 ± 169	4 of 4	1.20	None
Larval trachea	49 ± 45	4 of 4	0.06	Down
Larval carcass	24 ± 6	3 of 4	0.03	Down
S2 cells (growing)	1 ± 0	0 of 4	0.00	Down
Whole fly	856 ± 75	4 of 4

Looking for FBgn0000406. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720