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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0000426 through 18771 annotations produced 1 hits



Developmental embryonic B (SmF):

Annotation Number : CG16792
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0000426
Gbrowse : chr2R:8071350-8071778 (-) // 100.0 //
Probeset : 1628006_at
Accessions : protein= NP_523708;, nucleotide= NM_078984;
Pathway : via spliceosome // inferred by curator /// 0000398 // nuclear mRNA splicing
Interpro : via spliceosome // inferred from sequence or structural similarity /// 0000398 // nuclear mRNA splicing
FlyMine data for FBgn0000426.
BioGrid reports that CG16792 interacts with CG18591 CG2021 CG6610 .
TRiP has 1 RNAi stocks for FBgn0000426 available for purchase.
VDRC has 1 RNAi stocks for FBgn0000426 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain92 34 of 4 0.20Down
Head99 64 of 4 0.30Down
Eye78 24 of 4 0.20Down
Thoracicoabdominal ganglion108 84 of 4 0.30Down
Salivary gland99 74 of 4 0.25Down
Crop135 104 of 4 0.30Down
Midgut183 84 of 4 0.50Down
Tubule146 124 of 4 0.40Down
Hindgut113 74 of 4 0.30Down
Heart101 24 of 4 0.26Down
Fat body104 194 of 4 0.27Down
Ovary703 54 of 4 1.80Up
Testis200 104 of 4 0.50Down
Male accessory glands354 174 of 4 0.90None
Virgin spermatheca179 174 of 4 0.46Down
Mated spermatheca187 134 of 4 0.48Down
Adult carcass83 84 of 4 0.20Down
Larval CNS867 394 of 4 2.22Up
Larval Salivary gland360 84 of 4 0.92None
Larval midgut108 24 of 4 0.28Down
Larval tubule117 14 of 4 0.30Down
Larval hindgut163 114 of 4 0.42Down
Larval fat body153 24 of 4 0.40Down
Larval trachea473 764 of 4 1.21None
Larval carcass264 124 of 4 0.68Down
S2 cells (growing)702 144 of 4 1.79Up
Whole fly391 384 of 4

Looking for FBgn0000426. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime