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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0000439 through 18771 annotations produced 1 hits



chr3R:2617557-2628153 (+) // 100.0 // (deformed):

Annotation Number : CG2189
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1633869_at
Accessions : protein= , nucleotide= NP_477201;
Pathway : "0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription
Interpro : DNA-dependent // inferred from electronic annotation /// 0006917 // induction of apoptosis // inferred from genetic int
FlyMine data for full length.
Homophila reports that CG2189 is a close match (9e-11) to human gene EMX2 (NP_004089), a gene associated with Schizencephaly, 269160 (3).
BioGrid reports that CG2189 interacts with CG9527 CG17894 CG17894 CG17894 CG11648 CG1028 CG10236 CG3936 CG1030 CG10388 CG10325 CG8933 CG8933 CG2252 CG4637 CG1264 CG18740 CG15319 CG4319 CG1915 CG12284 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain27 24 of 4 2.20Up
Head169 104 of 413.40Up
Eye6 10 of 4 0.50Down
Thoracicoabdominal ganglion8 12 of 4 0.70None
Salivary gland20 42 of 4 1.64None
Crop7 11 of 4 0.60None
Midgut4 00 of 4 0.30Down
Tubule5 10 of 4 0.40Down
Hindgut7 12 of 4 0.60None
Heart3 01 of 4 0.31Down
Fat body13 33 of 4 1.05None
Ovary3 00 of 4 0.30Down
Testis4 11 of 4 0.40Down
Male accessory glands10 20 of 4 0.80None
Virgin spermatheca8 10 of 4 0.68None
Mated spermatheca8 13 of 4 0.64None
Adult carcass16 12 of 4 1.30None
Larval CNS23 44 of 4 1.84Up
Larval Salivary gland7 00 of 4 0.63Down
Larval midgut4 10 of 4 0.32Down
Larval tubule6 11 of 4 0.50Down
Larval hindgut4 12 of 4 0.36Down
Larval fat body4 20 of 4 0.40Down
Larval trachea2 22 of 4 0.24Down
Larval carcass5 01 of 4 0.40Down
S2 cells (growing)2 00 of 4 0.16Down
Whole fly12 14 of 4

Looking for FBgn0000439. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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