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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0000447 through 18771 annotations produced 1 hits



Dihydroorotate dehydrogenase (Dhod):

Annotation Number : CG9741
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0000447
Gbrowse : chr3R:4477112-4478404 (-) // 99.08 //
Probeset : 1623792_a_at
Accessions : protein= NP_477224; /// NP_599138;, nucleotide= NM_057876; /// NM_134311;
Pathway : 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // inferred
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004152 // dihydroorotate dehydrogenase activit
FlyMine data for FBgn0000447.
VDRC has 2 RNAi stocks for FBgn0000447 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain237 64 of 4 0.70Down
Head229 124 of 4 0.60Down
Eye264 114 of 4 0.73Down
Thoracicoabdominal ganglion267 154 of 4 0.70Down
Salivary gland306 84 of 4 0.85Down
Crop371 54 of 4 1.00None
Midgut184 54 of 4 0.50Down
Tubule439 364 of 4 1.20Up
Hindgut246 34 of 4 0.70Down
Heart214 74 of 4 0.59Down
Fat body249 204 of 4 0.69Down
Ovary407 44 of 4 1.10Up
Testis1087 344 of 4 3.00Up
Male accessory glands657 334 of 4 1.80Up
Virgin spermatheca436 124 of 4 1.20Up
Mated spermatheca509 204 of 4 1.41Up
Adult carcass249 184 of 4 0.70Down
Larval CNS355 74 of 4 0.98None
Larval Salivary gland509 204 of 4 1.41Up
Larval midgut168 134 of 4 0.46Down
Larval tubule240 44 of 4 0.70Down
Larval hindgut295 64 of 4 0.82Down
Larval fat body374 424 of 4 1.00None
Larval trachea502 504 of 4 1.39Up
Larval carcass307 144 of 4 0.85Down
S2 cells (growing)421 134 of 4 1.16Up
Whole fly362 144 of 4

Looking for FBgn0000447. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime