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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0000455 through 18771 annotations produced 2 hits



/// Dipeptidase C (CG5509 /// Dip-C):

Annotation Number : CG5509
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038054
Gbrowse : chr3R:8278211-8278677 (+) // 100.0 //
Probeset : 1632716_at
Accessions : protein= NP_650204;, nucleotide= NM_141947;
Interpro : 0004177 // aminopeptidase activity // inferred from electronic annotation /// 0008235 // metalloexopeptidase activity //
FlyMine data for FBgn0038054.
VDRC has 2 RNAi stocks for FBgn0038054 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 ± 11 of 4 0.10Down
Head1 ± 00 of 4 0.00Down
Eye4 ± 10 of 4 0.11Down
Thoracicoabdominal ganglion2 ± 00 of 4 0.10Down
Salivary gland9 ± 30 of 4 0.21Down
Crop3 ± 10 of 4 0.10Down
Midgut3 ± 00 of 4 0.10Down
Tubule4 ± 00 of 4 0.10Down
Hindgut4 ± 10 of 4 0.10Down
Heart1 ± 00 of 4 0.04Down
Fat body4 ± 20 of 4 0.10Down
Ovary4 ± 00 of 4 0.10Down
Testis470 ± 84 of 410.90Up
Male accessory glands8 ± 10 of 4 0.20Down
Virgin spermatheca3 ± 10 of 4 0.08Down
Mated spermatheca2 ± 00 of 4 0.05Down
Adult carcass2 ± 00 of 4 0.10Down
Larval CNS3 ± 21 of 4 0.08Down
Larval Salivary gland4 ± 20 of 4 0.10Down
Larval midgut3 ± 10 of 4 0.09Down
Larval tubule3 ± 00 of 4 0.10Down
Larval hindgut2 ± 00 of 4 0.07Down
Larval fat body104 ± 494 of 4 2.40None
Larval trachea7 ± 61 of 4 0.18Down
Larval carcass2 ± 00 of 4 0.06Down
S2 cells (growing)3 ± 10 of 4 0.09Down
Whole fly43 ± 34 of 4



Dipeptidase C (Dip-C):

Annotation Number : CG5663
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0000455
Gbrowse : chr3R:8237526-8239460 (-) // 100.0 //
Probeset : 1640743_at
Accessions : protein= NP_650192;, nucleotide= NM_141935;
Interpro : 0004177 // aminopeptidase activity // inferred from electronic annotation /// 0008235 // metalloexopeptidase activity //
FlyMine data for FBgn0000455.
BDGP gene expression has embryonic in situ data for Dip-C: 35 pix of staining in 9 body parts.
Homophila reports that CG5663 is a close match (2e-144) to human gene PEPD (NP_000276), a gene associated with Prolidase deficiency (3).
VDRC has 3 RNAi stocks for FBgn0000455 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain250 ± 54 of 4 1.00None
Head276 ± 254 of 4 1.10None
Eye276 ± 84 of 4 1.06None
Thoracicoabdominal ganglion351 ± 224 of 4 1.40Up
Salivary gland319 ± 114 of 4 1.23Up
Crop283 ± 44 of 4 1.10None
Midgut1096 ± 94 of 4 4.20Up
Tubule913 ± 1024 of 4 3.50Up
Hindgut345 ± 94 of 4 1.30Up
Heart590 ± 164 of 4 2.27Up
Fat body341 ± 184 of 4 1.32Up
Ovary292 ± 184 of 4 1.10None
Testis140 ± 124 of 4 0.50Down
Male accessory glands316 ± 64 of 4 1.20Up
Virgin spermatheca853 ± 324 of 4 3.29Up
Mated spermatheca749 ± 174 of 4 2.89Up
Adult carcass219 ± 114 of 4 0.80None
Larval CNS366 ± 584 of 4 1.41Up
Larval Salivary gland334 ± 54 of 4 1.29Up
Larval midgut1831 ± 1114 of 4 7.05Up
Larval tubule1518 ± 124 of 4 5.80Up
Larval hindgut509 ± 434 of 4 1.96Up
Larval fat body401 ± 344 of 4 1.50Up
Larval trachea323 ± 194 of 4 1.24Up
Larval carcass392 ± 304 of 4 1.51Up
S2 cells (growing)171 ± 24 of 4 0.66Down
Whole fly259 ± 154 of 4

Looking for FBgn0000455. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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