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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0000464 through 18771 annotations produced 1 hits



bypass (Lar):

Annotation Number : CG10443
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0000464
Gbrowse : chr2L:19611409-19731562 (+) // 100.0 //
Probeset : 1637537_at
Accessions : protein= NP_523604; /// NP_724220;, nucleotide= NM_078880; /// NM_165313;
Pathway : 0005875 // microtubule associated complex // inferred from direct assay /// 0005886 // plasma membrane // inferred from
Interpro : 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004725 // protein tyrosine ph
FlyMine data for FBgn0000464.
Homophila reports that CG10443 is a close match (6e-11) to human gene OPCML (NP_001012393), a gene associated with Epithelial ovarian cancer, somatic, 604370 (3).
BioGrid reports that CG10443 interacts with CG4032 CG4032 CG11199 CG18243 CG10975 CG10975 CG2248 CG15112 CG15112 CG1560 CG18214 CG18214 CG18214 CG18214 .
TRiP has 2 RNAi stocks for FBgn0000464 available for purchase.
VDRC has 3 RNAi stocks for FBgn0000464 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain434 ± 94 of 411.40Up
Head83 ± 54 of 4 2.20Up
Eye132 ± 164 of 4 3.47Up
Thoracicoabdominal ganglion261 ± 194 of 4 6.90Up
Salivary gland26 ± 22 of 4 0.70Down
Crop31 ± 24 of 4 0.80Down
Midgut18 ± 23 of 4 0.50Down
Tubule24 ± 13 of 4 0.60Down
Hindgut22 ± 24 of 4 0.60Down
Heart16 ± 04 of 4 0.42Down
Fat body17 ± 13 of 4 0.47Down
Ovary101 ± 24 of 4 2.70Up
Testis7 ± 12 of 4 0.20Down
Male accessory glands19 ± 31 of 4 0.50Down
Virgin spermatheca8 ± 11 of 4 0.22Down
Mated spermatheca9 ± 12 of 4 0.25Down
Adult carcass21 ± 11 of 4 0.60Down
Larval CNS194 ± 194 of 4 5.10Up
Larval Salivary gland37 ± 64 of 4 0.97None
Larval midgut16 ± 13 of 4 0.44Down
Larval tubule43 ± 34 of 4 1.10None
Larval hindgut27 ± 24 of 4 0.71Down
Larval fat body16 ± 23 of 4 0.40Down
Larval trachea49 ± 74 of 4 1.29None
Larval carcass22 ± 13 of 4 0.58Down
S2 cells (growing)51 ± 34 of 4 1.36Up
Whole fly38 ± 14 of 4

Looking for FBgn0000464. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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