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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0000490 through 18771 annotations produced 1 hits



March 2006 (FlyBase/BDGP 5.3) (chr2L:2428453-2459609 (+) // 100.0 //):

Annotation Number : CG9885
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : chr2-4.0
Gbrowse :
Probeset : 1630026_s_at
Accessions : protein= , nucleotide=
Interpro : "0001708 // cell fate specification // non-traceable author statement /// 0001708 // cell fate specification // traceabl
FlyMine data for chr2-4.0.
Homophila reports that CG9885 is a close match (3e-11) to human gene TGFB3 (NP_003230), a gene associated with Arrhythmogenic right ventricular dysplasia 1, 107970 (3).
BioGrid reports that CG9885 interacts with CG9930 CG11579 CG11579 CG3578 CG4379 CG4379 CG9554 CG9554 CG15671 CG5893 CG3938 CG3938 CG3938 CG3938 CG10079 CG10079 CG5460 CG3340 CG12399 CG12399 CG12399 CG12399 CG12399 CG12399 CG12399 CG12399 CG12399 CG12399 CG1775 CG1775 CG1775 CG1775 CG1775 CG1775 CG1775 CG1775 CG14228 CG1167 CG9375 CG14028 CG4952 CG4974 CG4974 CG1464 CG1464 CG1464 CG1464 CG3352 CG5562 CG5562 CG5562 CG5562 CG5562 CG5562 CG4353 CG4637 CG4637 CG4637 CG4637 CG4637 CG4637 CG2671 CG4943 CG8817 CG12058 CG15319 CG7892 CG7467 CG7393 CG12212 CG12212 CG3978 CG2411 CG2411 CG1857 CG1004 CG1891 CG1891 CG1891 CG1891 CG31695 CG31695 CG31695 CG31695 CG7734 CG7734 CG11121 CG9224 CG9224 CG9224 CG9224 CG10334 CG14026 CG14026 CG14026 CG14026 CG14026 CG14026 CG14026 CG14026 CG14026 CG14026 CG6868 CG1389 CG1389 CG1389 CG1389 CG1502 CG10491 CG14029 CG4889 CG4889 CG4889 CG4889 CG4889 CG4889 CG4889 CG7850 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain21 34 of 4 0.70Down
Head70 104 of 4 2.20Up
Eye86 84 of 4 2.68Up
Thoracicoabdominal ganglion29 24 of 4 0.90None
Salivary gland35 84 of 4 1.11None
Crop637 184 of 419.80Up
Midgut56 54 of 4 1.80Up
Tubule14 14 of 4 0.50Down
Hindgut67 74 of 4 2.10Up
Heart60 44 of 4 1.87Up
Fat body63 84 of 4 1.96Up
Ovary12 14 of 4 0.40Down
Testis32 24 of 4 1.00None
Male accessory glands127 94 of 4 3.90Up
Virgin spermatheca29 24 of 4 0.92None
Mated spermatheca37 34 of 4 1.16None
Adult carcass58 94 of 4 1.80None
Larval CNS63 104 of 4 1.98Up
Larval Salivary gland14 24 of 4 0.45Down
Larval midgut41 44 of 4 1.29None
Larval tubule4 10 of 4 0.10Down
Larval hindgut65 74 of 4 2.02Up
Larval fat body18 43 of 4 0.60Down
Larval trachea70 184 of 4 2.19Up
Larval carcass95 24 of 4 2.98Up
S2 cells (growing)1 00 of 4 0.04Down
Whole fly32 14 of 4

Looking for FBgn0000490. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime