FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0000504 through 18771 annotations produced 2 hits

chr3R:3760203-3793130 (-) // 99.89 // (doublesex):

Annotation Number : CG11094
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1623776_s_at
Accessions : protein= , nucleotide= NP_524272; /// NP_731197; /// NP_731198;
Pathway : "0000122 // negative regulation of transcription from RNA polymerase II promoter // traceable author statement /// 00003
Interpro : via spliceosome // traceable author statement /// 0006350 // transcription // inferred from electronic annotation /// 0
FlyMine data for full length.
BioGrid reports that CG11094 interacts with CG13281 CG1567 Dmel CG34168 CG11154 CG11326 CG12410 CG12592 CG13311 CG13397 CG13492 CG1490 CG1502 CG15170 CG15602 CG17376 CG17377 CG17666 CG17935 CG17945 CG17946 CG18617 CG2033 CG31626 CG31721 CG31740 CG31999 CG32354 CG32711 CG3533 CG4057 CG4282 CG4363 CG5180 CG6667 CG6933 CG6996 CG7123 CG7447 CG7570 CG8942 CG13201 CG13201 CG16724 CG33103 .

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	21 ± 1	4 of 4	0.30	Down
Head	119 ± 4	4 of 4	1.80	Up
Eye	60 ± 2	4 of 4	0.90	None
Thoracicoabdominal ganglion	55 ± 4	4 of 4	0.80	None
Salivary gland	440 ± 31	4 of 4	6.55	Up
Crop	325 ± 12	4 of 4	4.80	Up
Midgut	89 ± 4	4 of 4	1.30	None
Tubule	140 ± 66	4 of 4	2.10	None
Hindgut	106 ± 0	4 of 4	1.60	Up
Heart	219 ± 18	4 of 4	3.26	Up
Fat body	507 ± 57	4 of 4	7.54	Up
Ovary	9 ± 0	4 of 4	0.10	Down
Testis	1 ± 0	0 of 4	0.00	Down
Male accessory glands	8 ± 1	0 of 4	0.10	Down
Virgin spermatheca	684 ± 28	4 of 4	10.17	Up
Mated spermatheca	672 ± 26	4 of 4	9.99	Up
Adult carcass	277 ± 20	4 of 4	4.10	Up
Larval CNS	33 ± 9	4 of 4	0.50	Down
Larval Salivary gland	7 ± 2	2 of 4	0.11	Down
Larval midgut	11 ± 1	3 of 4	0.18	Down
Larval tubule	41 ± 6	4 of 4	0.60	None
Larval hindgut	22 ± 1	4 of 4	0.33	Down
Larval fat body	143 ± 23	4 of 4	2.10	Up
Larval trachea	13 ± 6	4 of 4	0.20	Down
Larval carcass	27 ± 2	4 of 4	0.41	Down
S2 cells (growing)	1 ± 0	0 of 4	0.02	Down
Whole fly	67 ± 8	4 of 4

chr3R:3750044-3793130 (-) // 100.0 // (doublesex):

Annotation Number : CG11094
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1640799_at
Accessions : protein= , nucleotide= NP_524272; /// NP_731197; /// NP_731198;
Pathway : "0000122 // negative regulation of transcription from RNA polymerase II promoter // traceable author statement /// 00003
Interpro : via spliceosome // traceable author statement /// 0006350 // transcription // inferred from electronic annotation /// 0
FlyMine data for full length.
BioGrid reports that CG11094 interacts with CG13281 CG1567 Dmel CG34168 CG11154 CG11326 CG12410 CG12592 CG13311 CG13397 CG13492 CG1490 CG1502 CG15170 CG15602 CG17376 CG17377 CG17666 CG17935 CG17945 CG17946 CG18617 CG2033 CG31626 CG31721 CG31740 CG31999 CG32354 CG32711 CG3533 CG4057 CG4282 CG4363 CG5180 CG6667 CG6933 CG6996 CG7123 CG7447 CG7570 CG8942 CG13201 CG13201 CG16724 CG33103 .

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	18 ± 1	4 of 4	0.60	None
Head	44 ± 7	4 of 4	1.40	None
Eye	33 ± 2	4 of 4	1.03	None
Thoracicoabdominal ganglion	59 ± 3	4 of 4	1.80	Up
Salivary gland	180 ± 3	4 of 4	5.49	Up
Crop	102 ± 5	4 of 4	3.10	Up
Midgut	51 ± 2	4 of 4	1.60	None
Tubule	147 ± 65	4 of 4	4.50	None
Hindgut	70 ± 1	4 of 4	2.10	Up
Heart	103 ± 9	4 of 4	3.14	Up
Fat body	127 ± 20	4 of 4	3.87	Up
Ovary	8 ± 0	4 of 4	0.30	Down
Testis	21 ± 2	4 of 4	0.70	None
Male accessory glands	62 ± 3	4 of 4	1.90	Up
Virgin spermatheca	108 ± 8	4 of 4	3.31	Up
Mated spermatheca	122 ± 5	4 of 4	3.71	Up
Adult carcass	81 ± 11	4 of 4	2.50	Up
Larval CNS	38 ± 6	4 of 4	1.18	None
Larval Salivary gland	13 ± 2	4 of 4	0.40	None
Larval midgut	9 ± 1	4 of 4	0.27	Down
Larval tubule	29 ± 4	4 of 4	0.90	None
Larval hindgut	11 ± 1	4 of 4	0.33	Down
Larval fat body	46 ± 4	4 of 4	1.40	None
Larval trachea	9 ± 1	4 of 4	0.30	Down
Larval carcass	17 ± 2	4 of 4	0.54	None
S2 cells (growing)	5 ± 1	4 of 4	0.17	Down
Whole fly	32 ± 7	4 of 4

Looking for FBgn0000504. 2 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720