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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0000504 through 18771 annotations produced 2 hits



chr3R:3750044-3793130 (-) // 100.0 // (doublesex):

Annotation Number : CG11094
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1640799_at
Accessions : protein= , nucleotide= NP_524272; /// NP_731197; /// NP_731198;
Pathway : "0000122 // negative regulation of transcription from RNA polymerase II promoter // traceable author statement /// 00003
Interpro : via spliceosome // traceable author statement /// 0006350 // transcription // inferred from electronic annotation /// 0
FlyMine data for full length.
BioGrid reports that CG11094 interacts with CG13281 CG1567 Dmel CG34168 CG11154 CG11326 CG12410 CG12592 CG13311 CG13397 CG13492 CG1490 CG1502 CG15170 CG15602 CG17376 CG17377 CG17666 CG17935 CG17945 CG17946 CG18617 CG2033 CG31626 CG31721 CG31740 CG31999 CG32354 CG32711 CG3533 CG4057 CG4282 CG4363 CG5180 CG6667 CG6933 CG6996 CG7123 CG7447 CG7570 CG8942 CG13201 CG13201 CG16724 CG33103 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain18 14 of 4 0.60None
Head44 74 of 4 1.40None
Eye33 24 of 4 1.03None
Thoracicoabdominal ganglion59 34 of 4 1.80Up
Salivary gland180 34 of 4 5.49Up
Crop102 54 of 4 3.10Up
Midgut51 24 of 4 1.60None
Tubule147 654 of 4 4.50None
Hindgut70 14 of 4 2.10Up
Heart103 94 of 4 3.14Up
Fat body127 204 of 4 3.87Up
Ovary8 04 of 4 0.30Down
Testis21 24 of 4 0.70None
Male accessory glands62 34 of 4 1.90Up
Virgin spermatheca108 84 of 4 3.31Up
Mated spermatheca122 54 of 4 3.71Up
Adult carcass81 114 of 4 2.50Up
Larval CNS38 64 of 4 1.18None
Larval Salivary gland13 24 of 4 0.40None
Larval midgut9 14 of 4 0.27Down
Larval tubule29 44 of 4 0.90None
Larval hindgut11 14 of 4 0.33Down
Larval fat body46 44 of 4 1.40None
Larval trachea9 14 of 4 0.30Down
Larval carcass17 24 of 4 0.54None
S2 cells (growing)5 14 of 4 0.17Down
Whole fly32 74 of 4



chr3R:3760203-3793130 (-) // 99.89 // (doublesex):

Annotation Number : CG11094
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1623776_s_at
Accessions : protein= , nucleotide= NP_524272; /// NP_731197; /// NP_731198;
Pathway : "0000122 // negative regulation of transcription from RNA polymerase II promoter // traceable author statement /// 00003
Interpro : via spliceosome // traceable author statement /// 0006350 // transcription // inferred from electronic annotation /// 0
FlyMine data for full length.
BioGrid reports that CG11094 interacts with CG13281 CG1567 Dmel CG34168 CG11154 CG11326 CG12410 CG12592 CG13311 CG13397 CG13492 CG1490 CG1502 CG15170 CG15602 CG17376 CG17377 CG17666 CG17935 CG17945 CG17946 CG18617 CG2033 CG31626 CG31721 CG31740 CG31999 CG32354 CG32711 CG3533 CG4057 CG4282 CG4363 CG5180 CG6667 CG6933 CG6996 CG7123 CG7447 CG7570 CG8942 CG13201 CG13201 CG16724 CG33103 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain21 14 of 4 0.30Down
Head119 44 of 4 1.80Up
Eye60 24 of 4 0.90None
Thoracicoabdominal ganglion55 44 of 4 0.80None
Salivary gland440 314 of 4 6.55Up
Crop325 124 of 4 4.80Up
Midgut89 44 of 4 1.30None
Tubule140 664 of 4 2.10None
Hindgut106 04 of 4 1.60Up
Heart219 184 of 4 3.26Up
Fat body507 574 of 4 7.54Up
Ovary9 04 of 4 0.10Down
Testis1 00 of 4 0.00Down
Male accessory glands8 10 of 4 0.10Down
Virgin spermatheca684 284 of 410.17Up
Mated spermatheca672 264 of 4 9.99Up
Adult carcass277 204 of 4 4.10Up
Larval CNS33 94 of 4 0.50Down
Larval Salivary gland7 22 of 4 0.11Down
Larval midgut11 13 of 4 0.18Down
Larval tubule41 64 of 4 0.60None
Larval hindgut22 14 of 4 0.33Down
Larval fat body143 234 of 4 2.10Up
Larval trachea13 64 of 4 0.20Down
Larval carcass27 24 of 4 0.41Down
S2 cells (growing)1 00 of 4 0.02Down
Whole fly67 84 of 4

Looking for FBgn0000504. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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