FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0000520 through 18771 annotations produced 1 hits

zeste-white 5 (dwg):

Annotation Number : CG2711
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0000520
Gbrowse : chrX:2621732-2624088 (+) // 99.8 //
Probeset : 1634748_at
Accessions : protein= NP_477338;, nucleotide= NM_057990;
Pathway : 0000790 // nuclear chromatin // inferred from direct assay /// 0005622 // intracellular // inferred from electronic anno
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding tran
FlyMine data for FBgn0000520.
Homophila reports that CG2711 is a close match (2e-11) to human gene ACLS;GLI3;PAPA;PAPB (NP_000159), a gene associated with Acrocallosal syndrome, 200990 (3);Greig cephalopolysyndactyly syndrome, 175700 (3);Pallister-Hall syndrome, 146510 (3);Polydactyly, postaxial, types A1 and B, 174200 (3);Polydactyly, preaxial, type IV, 174700 (3);{Hypothalamic hamartomas, somatic}, 241800 (3).
BioGrid reports that CG2711 interacts with CG6654 CG10159 CG10159 CG2759 .
TRiP has 2 RNAi stocks for FBgn0000520 available for purchase.
VDRC has 4 RNAi stocks for FBgn0000520 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	77 ± 3	4 of 4	1.30	Up
Head	37 ± 1	4 of 4	0.60	Down
Eye	42 ± 4	4 of 4	0.70	Down
Thoracicoabdominal ganglion	65 ± 3	4 of 4	1.10	None
Salivary gland	72 ± 7	4 of 4	1.18	None
Crop	49 ± 0	4 of 4	0.80	None
Midgut	31 ± 1	4 of 4	0.50	Down
Tubule	48 ± 0	4 of 4	0.80	Down
Hindgut	38 ± 2	4 of 4	0.60	Down
Heart	26 ± 1	4 of 4	0.43	Down
Fat body	33 ± 7	3 of 4	0.55	Down
Ovary	104 ± 3	4 of 4	1.70	Up
Testis	10 ± 0	1 of 4	0.20	Down
Male accessory glands	47 ± 4	3 of 4	0.80	None
Virgin spermatheca	58 ± 1	4 of 4	0.95	None
Mated spermatheca	57 ± 2	4 of 4	0.94	None
Adult carcass	42 ± 8	2 of 4	0.70	None
Larval CNS	71 ± 3	4 of 4	1.17	None
Larval Salivary gland	75 ± 4	4 of 4	1.23	None
Larval midgut	27 ± 2	4 of 4	0.45	Down
Larval tubule	44 ± 0	4 of 4	0.70	Down
Larval hindgut	38 ± 1	4 of 4	0.62	Down
Larval fat body	23 ± 3	4 of 4	0.40	Down
Larval trachea	74 ± 7	4 of 4	1.22	None
Larval carcass	51 ± 2	4 of 4	0.84	None
S2 cells (growing)	54 ± 0	4 of 4	0.89	None
Whole fly	61 ± 3	4 of 4

Looking for FBgn0000520. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720