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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0000527 through 18771 annotations produced 1 hits



ebony (e):

Annotation Number : CG3331
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0000527
Gbrowse : chr3R:17055551-17062900 (-) // 100.0 //
Probeset : 1639823_at
Accessions : protein= NP_524431;, nucleotide= NM_079707;
Pathway : 0005737 // cytoplasm // inferred from direct assay
Interpro : 0000036 // acyl carrier activity // inferred from electronic annotation /// 0003824 // catalytic activity // inferred fr
FlyMine data for FBgn0000527.
BDGP gene expression has embryonic in situ data for e: 39 pix of staining in 5 body parts.
BioGrid reports that CG3331 interacts with CG8611 CG3757 CG3757 .
TRiP has 1 RNAi stocks for FBgn0000527 available for purchase.
VDRC has 3 RNAi stocks for FBgn0000527 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain328 ± 84 of 413.10Up
Head367 ± 184 of 414.60Up
Eye831 ± 254 of 433.13Up
Thoracicoabdominal ganglion313 ± 74 of 412.50Up
Salivary gland12 ± 20 of 4 0.49Down
Crop24 ± 32 of 4 1.00None
Midgut2 ± 00 of 4 0.10Down
Tubule6 ± 10 of 4 0.30Down
Hindgut14 ± 21 of 4 0.60Down
Heart7 ± 10 of 4 0.29Down
Fat body11 ± 10 of 4 0.47Down
Ovary3 ± 10 of 4 0.10Down
Testis12 ± 13 of 4 0.50Down
Male accessory glands7 ± 10 of 4 0.30Down
Virgin spermatheca8 ± 20 of 4 0.35Down
Mated spermatheca12 ± 11 of 4 0.51Down
Adult carcass53 ± 44 of 4 2.10Up
Larval CNS62 ± 44 of 4 2.48Up
Larval Salivary gland34 ± 64 of 4 1.38None
Larval midgut7 ± 20 of 4 0.31Down
Larval tubule6 ± 01 of 4 0.30Down
Larval hindgut19 ± 21 of 4 0.79None
Larval fat body4 ± 00 of 4 0.20Down
Larval trachea161 ± 1094 of 4 6.42None
Larval carcass708 ± 5284 of 428.23None
S2 cells (growing)3 ± 00 of 4 0.15Down
Whole fly25 ± 24 of 4

Looking for FBgn0000527. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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