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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0000529 through 18771 annotations produced 1 hits



brain-specific homeobox (bsh):

Annotation Number : CG10604
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0000529
Gbrowse : chr2L:19766119-19768712 (-) // 100.0 //
Probeset : 1639239_at
Accessions : protein= NP_477350; /// NP_995728;, nucleotide= NM_058002; /// NM_206006;
Pathway : DNA-dependent // inferred from electronic annotation /// 0006355 // regulation of transcription
Interpro : DNA-dependent // non-traceable author statement /// 0007275 // multicellular organismal development // inferred from el
FlyMine data for FBgn0000529.
Homophila reports that CG10604 is a close match (9e-11) to human gene NKX2-1;NKX2A;TITF1;TTF1 (NP_003308), a gene associated with Chorea, hereditary benign, 118700 (3);Choreoathetosis, hypothyroidism, and neonatal respiratory distress, 610978 (3);Goiter, familial, due to TTF-1 defect (1).
BioGrid reports that CG10604 interacts with CG3203 CG3780 CG4550 CG7937 CG11138 CG11372 CG11847 CG12470 CG1474 CG16826 CG1921 CG2851 CG3274 CG3792 CG5017 CG6770 CG7037 CG9232 CG9986 CG33522 CG9027 CG5829 .
TRiP has 1 RNAi stocks for FBgn0000529 available for purchase.
VDRC has 2 RNAi stocks for FBgn0000529 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain21 ± 34 of 4 9.70Up
Head6 ± 11 of 4 2.90None
Eye16 ± 14 of 4 7.22Up
Thoracicoabdominal ganglion1 ± 00 of 4 0.90None
Salivary gland2 ± 10 of 4 1.30None
Crop3 ± 10 of 4 1.60None
Midgut2 ± 00 of 4 1.00None
Tubule2 ± 00 of 4 1.30None
Hindgut1 ± 10 of 4 0.90None
Heart1 ± 10 of 4 0.89None
Fat body2 ± 30 of 4 1.16None
Ovary1 ± 10 of 4 0.60None
Testis2 ± 00 of 4 1.10None
Male accessory glands1 ± 00 of 4 0.50None
Virgin spermatheca3 ± 00 of 4 1.69None
Mated spermatheca1 ± 00 of 4 0.65None
Adult carcass1 ± 00 of 4 0.90None
Larval CNS15 ± 14 of 4 7.02Up
Larval Salivary gland3 ± 10 of 4 1.48None
Larval midgut3 ± 10 of 4 1.52None
Larval tubule2 ± 10 of 4 1.20None
Larval hindgut2 ± 10 of 4 1.02None
Larval fat body3 ± 10 of 4 1.40None
Larval trachea1 ± 10 of 4 0.73None
Larval carcass1 ± 00 of 4 0.46None
S2 cells (growing)1 ± 00 of 4 0.57None
Whole fly2 ± 00 of 4

Looking for FBgn0000529. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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