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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0000536 through 18771 annotations produced 1 hits



Ethanolamine kinase (eas):

Annotation Number : CG3525
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0000536
Gbrowse : chrX:16172359-16179654 (+) // 100.0 //
Probeset : 1640655_s_at
Accessions : protein= NP_523364; /// NP_727941; /// NP_727942; /// NP_727943; /// NP_788914;, nucleotide= NM_078640; /// NM_167489; /// NM_167490; /// NM_167491; /// NM_176741;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0004103 // choline kinase activity // non-trace
FlyMine data for FBgn0000536.
BioGrid reports that CG3525 interacts with CG8993 CG4466 CG6779 .
TRiP has 2 RNAi stocks for FBgn0000536 available for purchase.
VDRC has 3 RNAi stocks for FBgn0000536 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain211 104 of 4 0.70Down
Head554 164 of 4 1.90Up
Eye306 94 of 4 1.08None
Thoracicoabdominal ganglion175 154 of 4 0.60Down
Salivary gland1554 824 of 4 5.47Up
Crop349 204 of 4 1.20Up
Midgut444 124 of 4 1.60Up
Tubule423 744 of 4 1.50None
Hindgut887 254 of 4 3.10Up
Heart595 84 of 4 2.10Up
Fat body1115 1074 of 4 3.93Up
Ovary189 124 of 4 0.70Down
Testis170 84 of 4 0.60Down
Male accessory glands1195 554 of 4 4.20Up
Virgin spermatheca1679 1764 of 4 5.91Up
Mated spermatheca1885 1394 of 4 6.63Up
Adult carcass657 154 of 4 2.30Up
Larval CNS208 274 of 4 0.73Down
Larval Salivary gland196 34 of 4 0.69Down
Larval midgut179 144 of 4 0.63Down
Larval tubule1213 584 of 4 4.30Up
Larval hindgut414 264 of 4 1.46Up
Larval fat body248 324 of 4 0.90None
Larval trachea117 224 of 4 0.41Down
Larval carcass45 14 of 4 0.16Down
S2 cells (growing)165 34 of 4 0.58Down
Whole fly284 114 of 4

Looking for FBgn0000536. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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