FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0000541 through 18771 annotations produced 1 hits

Nucleosome remodeling factor (E(bx)):

Annotation Number : CG32346
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0000541
Gbrowse : chr3L:234100-246864 (-) // 100.0 //
Probeset : 1625243_a_at
Accessions : protein= NP_001163304; /// NP_001163305; /// NP_728505; /// NP_728507; /// NP_995946;, nucleotide= NM_001169833; /// NM_001169834; /// NM_167817; /// NM_167819; /// NM_206224;
Pathway : 0005634 // nucleus // inferred from electronic annotation /// 0016589 // NURF complex // inferred from direct assay ///
Interpro : 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic
FlyMine data for FBgn0000541.
BDGP gene expression has embryonic in situ data for E(bx): 4 pix of staining in 1 body parts.
Homophila reports that CG32346 is a close match (2e-12) to human gene KIAA1111;MRXSSD;PHF8;ZNF422 (NP_055922), a gene associated with Mental retardation syndrome, X-linked, Siderius type, 300263 (3).
BioGrid reports that CG32346 interacts with CG6945 CG10388 CG1594 CG18028 CG5993 CG8625 CG4236 CG4634 CG8625 .
TRiP has 3 RNAi stocks for FBgn0000541 available for purchase.
VDRC has 2 RNAi stocks for FBgn0000541 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	291 ± 3	4 of 4	2.20	Up
Head	101 ± 9	4 of 4	0.80	None
Eye	51 ± 2	4 of 4	0.40	Down
Thoracicoabdominal ganglion	159 ± 9	4 of 4	1.20	None
Salivary gland	74 ± 4	4 of 4	0.57	Down
Crop	75 ± 2	4 of 4	0.60	Down
Midgut	57 ± 3	4 of 4	0.40	Down
Tubule	45 ± 2	4 of 4	0.40	Down
Hindgut	64 ± 3	4 of 4	0.50	Down
Heart	37 ± 5	4 of 4	0.28	Down
Fat body	65 ± 6	4 of 4	0.50	Down
Ovary	458 ± 9	4 of 4	3.50	Up
Testis	180 ± 13	4 of 4	1.40	Up
Male accessory glands	82 ± 8	4 of 4	0.60	Down
Virgin spermatheca	54 ± 5	4 of 4	0.42	Down
Mated spermatheca	57 ± 5	4 of 4	0.44	Down
Adult carcass	53 ± 5	4 of 4	0.40	Down
Larval CNS	446 ± 53	4 of 4	3.41	Up
Larval Salivary gland	118 ± 9	4 of 4	0.90	None
Larval midgut	48 ± 5	4 of 4	0.37	Down
Larval tubule	54 ± 2	4 of 4	0.40	Down
Larval hindgut	80 ± 4	4 of 4	0.61	Down
Larval fat body	61 ± 9	4 of 4	0.50	Down
Larval trachea	107 ± 6	4 of 4	0.82	None
Larval carcass	99 ± 4	4 of 4	0.76	None
S2 cells (growing)	156 ± 6	4 of 4	1.19	None
Whole fly	131 ± 13	4 of 4

Looking for FBgn0000541. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720