FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0000542 through 18771 annotations produced 3 hits

echinus (ec):

Annotation Number : CG2904
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0000542
Gbrowse : chrX:3744315-3750618 (+) // 100.0 //
Probeset : 1631485_a_at
Accessions : protein= NP_001096877; /// NP_570078; /// NP_726893;, nucleotide= NM_001103407; /// NM_130722; /// NM_166992;
Interpro : 0004221 // ubiquitin thiolesterase activity // inferred from electronic annotation /// 0004221 // ubiquitin thiolesteras
FlyMine data for FBgn0000542.
VDRC has 1 RNAi stocks for FBgn0000542 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	1 ± 0	0 of 4	1.10	None
Head	3 ± 1	0 of 4	2.30	None
Eye	1 ± 0	0 of 4	0.72	None
Thoracicoabdominal ganglion	0 ± 0	0 of 4	0.50	None
Salivary gland	5 ± 2	0 of 4	3.09	None
Crop	5 ± 2	0 of 4	3.50	None
Midgut	1 ± 0	0 of 4	0.70	None
Tubule	1 ± 0	0 of 4	1.00	None
Hindgut	9 ± 2	0 of 4	5.90	Up
Heart	0 ± 0	0 of 4	0.50	None
Fat body	3 ± 2	0 of 4	2.09	None
Ovary	3 ± 1	0 of 4	2.20	None
Testis	4 ± 1	0 of 4	2.70	None
Male accessory glands	1 ± 0	0 of 4	0.70	None
Virgin spermatheca	1 ± 0	0 of 4	0.98	None
Mated spermatheca	1 ± 0	0 of 4	0.75	None
Adult carcass	1 ± 0	0 of 4	1.10	None
Larval CNS	7 ± 1	2 of 4	4.72	Up
Larval Salivary gland	14 ± 1	3 of 4	9.20	Up
Larval midgut	1 ± 0	0 of 4	0.69	None
Larval tubule	1 ± 0	0 of 4	1.20	None
Larval hindgut	10 ± 1	0 of 4	6.45	Up
Larval fat body	1 ± 0	0 of 4	0.80	None
Larval trachea	7 ± 4	1 of 4	4.42	None
Larval carcass	6 ± 2	0 of 4	3.91	None
S2 cells (growing)	97 ± 3	4 of 4	60.83	Up
Whole fly	1 ± 0	0 of 4

echinus (ec):

Annotation Number : HDC17289
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0000542
Gbrowse : chrX:3730696-3735750 (+) // 100.0 //
Probeset : 1629348_at
Accessions : protein= NP_001096877; /// NP_570078; /// NP_726893;, nucleotide= NM_001103407; /// NM_130722; /// NM_166992;
Interpro : 0004221 // ubiquitin thiolesterase activity // inferred from electronic annotation /// 0004221 // ubiquitin thiolesteras
FlyMine data for FBgn0000542.
VDRC has 1 RNAi stocks for FBgn0000542 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	2 ± 0	0 of 4	0.60	None
Head	1 ± 0	0 of 4	0.50	None
Eye	0 ± 0	0 of 4	0.23	None
Thoracicoabdominal ganglion	2 ± 1	0 of 4	0.60	None
Salivary gland	5 ± 1	0 of 4	1.42	None
Crop	1 ± 0	0 of 4	0.40	None
Midgut	3 ± 1	0 of 4	0.90	None
Tubule	2 ± 0	0 of 4	0.60	Down
Hindgut	0 ± 0	0 of 4	0.30	None
Heart	1 ± 0	0 of 4	0.54	None
Fat body	1 ± 0	0 of 4	0.31	None
Ovary	0 ± 0	0 of 4	0.20	None
Testis	0 ± 0	0 of 4	0.20	None
Male accessory glands	4 ± 1	0 of 4	1.30	None
Virgin spermatheca	0 ± 0	0 of 4	0.20	None
Mated spermatheca	1 ± 1	0 of 4	0.53	None
Adult carcass	1 ± 0	0 of 4	0.40	None
Larval CNS	0 ± 0	0 of 4	0.18	None
Larval Salivary gland	0 ± 0	0 of 4	0.24	None
Larval midgut	1 ± 0	0 of 4	0.39	None
Larval tubule	1 ± 0	0 of 4	0.50	None
Larval hindgut	0 ± 0	0 of 4	0.19	None
Larval fat body	1 ± 0	0 of 4	0.40	None
Larval trachea	1 ± 0	0 of 4	0.28	None
Larval carcass	1 ± 0	0 of 4	0.43	None
S2 cells (growing)	1 ± 0	0 of 4	0.35	None
Whole fly	3 ± 1	0 of 4

echinus (ec):

Annotation Number : HDC17287
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0000542
Gbrowse : chrX:3713180-3715204 (+) // 96.22 //
Probeset : 1626919_at
Accessions : protein= NP_001096877; /// NP_570078; /// NP_726893;, nucleotide= NM_001103407; /// NM_130722; /// NM_166992;
Interpro : 0004221 // ubiquitin thiolesterase activity // inferred from electronic annotation /// 0004221 // ubiquitin thiolesteras
FlyMine data for FBgn0000542.
VDRC has 1 RNAi stocks for FBgn0000542 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	1 ± 0	0 of 4	1.10	None
Head	2 ± 1	0 of 4	1.90	None
Eye	3 ± 0	0 of 4	2.02	None
Thoracicoabdominal ganglion	0 ± 0	0 of 4	0.60	None
Salivary gland	5 ± 2	0 of 4	3.66	None
Crop	0 ± 0	0 of 4	0.60	None
Midgut	0 ± 0	0 of 4	0.50	None
Tubule	4 ± 1	0 of 4	2.80	Up
Hindgut	1 ± 0	0 of 4	1.20	None
Heart	1 ± 0	0 of 4	0.89	None
Fat body	2 ± 2	0 of 4	1.90	None
Ovary	1 ± 0	0 of 4	0.80	None
Testis	1 ± 0	0 of 4	0.80	None
Male accessory glands	2 ± 1	0 of 4	1.30	None
Virgin spermatheca	2 ± 0	0 of 4	1.48	None
Mated spermatheca	6 ± 1	0 of 4	4.21	Up
Adult carcass	3 ± 1	0 of 4	2.10	None
Larval CNS	0 ± 0	0 of 4	0.51	None
Larval Salivary gland	1 ± 0	0 of 4	0.97	None
Larval midgut	0 ± 0	0 of 4	0.36	None
Larval tubule	3 ± 1	0 of 4	1.90	None
Larval hindgut	1 ± 0	0 of 4	0.90	None
Larval fat body	3 ± 1	0 of 4	2.00	None
Larval trachea	1 ± 2	0 of 4	1.30	None
Larval carcass	1 ± 0	0 of 4	0.89	None
S2 cells (growing)	1 ± 0	0 of 4	0.93	None
Whole fly	1 ± 0	0 of 4

Looking for FBgn0000542. 3 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720