FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0000552 through 18771 annotations produced 1 hits

ecdysone-dependent gene-84A-1 (Edg84A):

Annotation Number : CG2345
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0000552
Gbrowse : chr3R:2510171-2510855 (+) // 100.0 //
Probeset : 1636944_at
Accessions : protein= NP_524247;, nucleotide= NM_079523;
Interpro : 0005214 // structural constituent of chitin-based cuticle // inferred from sequence or structural similarity /// 0008011
FlyMine data for FBgn0000552.
VDRC has 2 RNAi stocks for FBgn0000552 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	1 ± 0	0 of 4	2.00	None
Head	1 ± 0	0 of 4	1.20	None
Eye	1 ± 1	0 of 4	2.41	None
Thoracicoabdominal ganglion	1 ± 0	0 of 4	1.60	None
Salivary gland	6 ± 4	0 of 4	7.81	None
Crop	3 ± 1	0 of 4	4.10	None
Midgut	0 ± 0	0 of 4	1.10	None
Tubule	3 ± 0	0 of 4	3.80	Up
Hindgut	1 ± 0	0 of 4	1.40	None
Heart	0 ± 0	0 of 4	1.00	None
Fat body	1 ± 0	0 of 4	2.19	None
Ovary	0 ± 0	0 of 4	0.90	None
Testis	3 ± 1	0 of 4	3.70	None
Male accessory glands	15 ± 2	2 of 4	19.60	Up
Virgin spermatheca	1 ± 0	0 of 4	1.22	None
Mated spermatheca	2 ± 0	0 of 4	2.44	Up
Adult carcass	4 ± 1	0 of 4	5.70	None
Larval CNS	3 ± 4	0 of 4	4.94	None
Larval Salivary gland	1 ± 0	0 of 4	1.72	None
Larval midgut	1 ± 0	0 of 4	1.25	None
Larval tubule	1 ± 0	0 of 4	1.70	None
Larval hindgut	1 ± 0	0 of 4	1.69	None
Larval fat body	1 ± 0	0 of 4	1.90	None
Larval trachea	2 ± 1	0 of 4	2.66	None
Larval carcass	3 ± 1	0 of 4	4.09	None
S2 cells (growing)	1 ± 0	0 of 4	1.72	None
Whole fly	0 ± 0	0 of 4

Looking for FBgn0000552. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720