FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0000556 through 18771 annotations produced 1 hits

chr2R:7779596-7783116 (+) // 100.0 // (elongation factor 1-alpha F1):

Annotation Number : CG8280
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1638351_s_at
Accessions : protein= , nucleotide= NP_477375; /// NP_725085;
Pathway : 0006412 // translation // non-traceable author statement /// 0006412 // translation // inferred from electronic annotati
Interpro : 0005737 // cytoplasm // non-traceable author statement /// 0005737 // cytoplasm // inferred from electronic annotation /
FlyMine data for full length.
Homophila reports that CG8280 is a close match (4e-36) to human gene COXPD4;EFTU;TUFM (NP_003312), a gene associated with Combined oxidative phosphorylation deficiency 4, 610678 (3).
BioGrid reports that CG8280 interacts with CG9060 CG8368 CG9288 CG9902 .

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	2777 ± 45	4 of 4	0.60	Down
Head	5267 ± 174	4 of 4	1.10	None
Eye	6993 ± 312	4 of 4	1.44	Up
Thoracicoabdominal ganglion	3858 ± 63	4 of 4	0.80	None
Salivary gland	17625 ± 1112	4 of 4	3.64	Up
Crop	6565 ± 406	4 of 4	1.40	Up
Midgut	5939 ± 197	4 of 4	1.20	Up
Tubule	7586 ± 184	4 of 4	1.60	Up
Hindgut	5524 ± 101	4 of 4	1.10	None
Heart	8431 ± 609	4 of 4	1.74	Up
Fat body	7308 ± 928	4 of 4	1.51	Up
Ovary	3972 ± 116	4 of 4	0.80	None
Testis	2540 ± 93	4 of 4	0.50	Down
Male accessory glands	10982 ± 302	4 of 4	2.30	Up
Virgin spermatheca	7227 ± 186	4 of 4	1.49	Up
Mated spermatheca	7262 ± 186	4 of 4	1.50	Up
Adult carcass	7456 ± 418	4 of 4	1.50	Up
Larval CNS	3329 ± 161	4 of 4	0.69	Down
Larval Salivary gland	9565 ± 318	4 of 4	1.97	Up
Larval midgut	7121 ± 214	4 of 4	1.47	Up
Larval tubule	6335 ± 71	4 of 4	1.30	Up
Larval hindgut	5866 ± 65	4 of 4	1.21	None
Larval fat body	9427 ± 981	4 of 4	1.90	Up
Larval trachea	6999 ± 552	4 of 4	1.44	Up
Larval carcass	5806 ± 464	4 of 4	1.20	None
S2 cells (growing)	5203 ± 69	4 of 4	1.07	None
Whole fly	4846 ± 357	4 of 4

Looking for FBgn0000556. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720