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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0000560 through 18771 annotations produced 1 hits



eagle (eg):

Annotation Number : CG7383
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0000560
Gbrowse : chr3L:21801802-21811081 (+) // 100.0 //
Probeset : 1629326_s_at
Accessions : protein= NP_524206; /// NP_730689;, nucleotide= NM_079482; /// NM_168938;
Pathway : DNA-dependent // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred fr
Interpro : 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // non-traceable author sta
FlyMine data for FBgn0000560.
Homophila reports that CG7383 is a close match (8e-11) to human gene GCR;GRL;NR3C1 (NP_001018087), a gene associated with Cortisol resistance (3).
BioGrid reports that CG7383 interacts with CG7583 CG9375 CG9768 CG1857 CG12559 CG7850 Dmel CG33956 .
TRiP has 2 RNAi stocks for FBgn0000560 available for purchase.
VDRC has 2 RNAi stocks for FBgn0000560 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.40None
Head6 13 of 4 1.80None
Eye2 00 of 4 0.56None
Thoracicoabdominal ganglion1 00 of 4 0.40None
Salivary gland9 31 of 4 2.37None
Crop8 22 of 4 2.20None
Midgut0 00 of 4 0.10Down
Tubule3 00 of 4 0.80None
Hindgut0 00 of 4 0.20None
Heart0 00 of 4 0.22None
Fat body8 32 of 4 2.06None
Ovary0 00 of 4 0.20None
Testis34 34 of 4 8.90Up
Male accessory glands5 20 of 4 1.30None
Virgin spermatheca1 00 of 4 0.44None
Mated spermatheca4 12 of 4 1.03None
Adult carcass5 30 of 4 1.40None
Larval CNS21 24 of 4 5.61Up
Larval Salivary gland2 10 of 4 0.67None
Larval midgut1 10 of 4 0.33None
Larval tubule3 10 of 4 0.80None
Larval hindgut2 01 of 4 0.59None
Larval fat body8 32 of 4 2.00None
Larval trachea22 34 of 4 5.74Up
Larval carcass2 11 of 4 0.67None
S2 cells (growing)0 00 of 4 0.21None
Whole fly3 11 of 4

Looking for FBgn0000560. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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