FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0000565 through 18771 annotations produced 1 hits

methionine-S-sulfoxide reductase (Eip71CD):

Annotation Number : CG7266
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0000565
Gbrowse : chr3L:15504152-15506302 (+) // 100.0 //
Probeset : 1625276_a_at
Accessions : protein= NP_524085; /// NP_730047; /// NP_730048; /// NP_996093;, nucleotide= NM_079361; /// NM_168622; /// NM_168623; /// NM_206371;
Interpro : "0008113 // peptide-methionine-(S)-S-oxide reductase activity // inferred from direct assay /// 0008113 // peptide-methi
FlyMine data for FBgn0000565.
BDGP gene expression has embryonic in situ data for Eip71CD: 40 pix of staining in 26 body parts.
VDRC has 4 RNAi stocks for FBgn0000565 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	575 ± 21	4 of 4	2.20	Up
Head	670 ± 40	4 of 4	2.60	Up
Eye	187 ± 13	4 of 4	0.72	None
Thoracicoabdominal ganglion	728 ± 19	4 of 4	2.80	Up
Salivary gland	243 ± 3	4 of 4	0.93	None
Crop	145 ± 13	4 of 4	0.60	Down
Midgut	770 ± 40	4 of 4	2.90	Up
Tubule	70 ± 11	4 of 4	0.30	Down
Hindgut	85 ± 1	4 of 4	0.30	Down
Heart	212 ± 30	4 of 4	0.81	None
Fat body	467 ± 215	4 of 4	1.79	None
Ovary	171 ± 3	4 of 4	0.70	None
Testis	29 ± 2	4 of 4	0.10	Down
Male accessory glands	57 ± 7	4 of 4	0.20	Down
Virgin spermatheca	162 ± 49	4 of 4	0.62	None
Mated spermatheca	385 ± 69	4 of 4	1.47	None
Adult carcass	667 ± 19	4 of 4	2.50	Up
Larval CNS	176 ± 19	4 of 4	0.68	None
Larval Salivary gland	85 ± 9	4 of 4	0.33	Down
Larval midgut	102 ± 15	4 of 4	0.39	Down
Larval tubule	73 ± 10	4 of 4	0.30	Down
Larval hindgut	71 ± 6	4 of 4	0.27	Down
Larval fat body	1281 ± 284	4 of 4	4.90	Up
Larval trachea	155 ± 26	4 of 4	0.59	Down
Larval carcass	454 ± 65	4 of 4	1.73	None
S2 cells (growing)	51 ± 5	4 of 4	0.20	Down
Whole fly	261 ± 31	4 of 4

Looking for FBgn0000565. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720