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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0000566 through 18771 annotations produced 1 hits



Ecdysone-induced protein 40kD (Eip55E):

Annotation Number : CG5345
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0000566
Gbrowse : chr2R:14515398-14516792 (+) // 100.0 //
Probeset : 1623861_at
Accessions : protein= NP_611352;, nucleotide= NM_137508;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004123 // cystathionine gamma-lyase activity /
FlyMine data for FBgn0000566.
BDGP gene expression has embryonic in situ data for Eip55E: 20 pix of staining in 15 body parts.
Homophila reports that CG5345 is a close match (2e-115) to human gene CTH (NP_714964), a gene associated with Cystathioninuria, 219500 (3);Homocysteine, total plasma, elevated (3).
TRiP has 2 RNAi stocks for FBgn0000566 available for purchase.
VDRC has 1 RNAi stocks for FBgn0000566 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain99 ± 44 of 4 0.40Down
Head201 ± 264 of 4 0.80None
Eye160 ± 34 of 4 0.61Down
Thoracicoabdominal ganglion109 ± 74 of 4 0.40Down
Salivary gland768 ± 104 of 4 2.90Up
Crop180 ± 94 of 4 0.70Down
Midgut487 ± 204 of 4 1.80Up
Tubule570 ± 494 of 4 2.20Up
Hindgut304 ± 174 of 4 1.10None
Heart223 ± 114 of 4 0.84Down
Fat body353 ± 294 of 4 1.33Up
Ovary370 ± 84 of 4 1.40Up
Testis53 ± 24 of 4 0.20Down
Male accessory glands725 ± 284 of 4 2.70Up
Virgin spermatheca204 ± 164 of 4 0.77Down
Mated spermatheca249 ± 94 of 4 0.94None
Adult carcass202 ± 244 of 4 0.80None
Larval CNS319 ± 294 of 4 1.20Up
Larval Salivary gland1230 ± 834 of 4 4.64Up
Larval midgut187 ± 184 of 4 0.71Down
Larval tubule268 ± 124 of 4 1.00None
Larval hindgut339 ± 484 of 4 1.28None
Larval fat body1775 ± 824 of 4 6.70Up
Larval trachea458 ± 834 of 4 1.73Up
Larval carcass328 ± 504 of 4 1.24None
S2 cells (growing)382 ± 64 of 4 1.44Up
Whole fly265 ± 94 of 4

Looking for FBgn0000566. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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