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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0000567 through 18771 annotations produced 2 hits



ecdysone inducible protein (Eip74EF):

Annotation Number : LP01487
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0000567
Gbrowse : chr3L:17595824-17612385 (-) // 100.0 //
Probeset : 1634440_s_at
Accessions : protein= NP_001014590; /// NP_730286; /// NP_730287; /// NP_730288;, nucleotide= NM_001014590; /// NM_168739; /// NM_168740; /// NM_168741;
Pathway : DNA-dependent // inferred from sequence or structural similarity /// 0006355 // regulation of transcription
Interpro : DNA-dependent // inferred from electronic annotation /// 0006914 // autophagy // inferred from mutant phenotype /// 000
FlyMine data for FBgn0000567.
BDGP gene expression has embryonic in situ data for Eip74EF: 4 pix of staining in 1 body parts.
TRiP has 1 RNAi stocks for FBgn0000567 available for purchase.
VDRC has 2 RNAi stocks for FBgn0000567 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain123 ± 54 of 4 3.20Up
Head48 ± 84 of 4 1.20None
Eye165 ± 44 of 4 4.24Up
Thoracicoabdominal ganglion74 ± 84 of 4 1.90Up
Salivary gland26 ± 171 of 4 0.68None
Crop153 ± 164 of 4 3.90Up
Midgut77 ± 34 of 4 2.00Up
Tubule29 ± 73 of 4 0.70None
Hindgut91 ± 74 of 4 2.30Up
Heart103 ± 54 of 4 2.65Up
Fat body58 ± 194 of 4 1.50None
Ovary24 ± 24 of 4 0.60Down
Testis10 ± 04 of 4 0.30Down
Male accessory glands114 ± 94 of 4 2.90Up
Virgin spermatheca96 ± 74 of 4 2.46Up
Mated spermatheca82 ± 54 of 4 2.12Up
Adult carcass84 ± 213 of 4 2.20None
Larval CNS9 ± 20 of 4 0.24Down
Larval Salivary gland21 ± 102 of 4 0.54None
Larval midgut12 ± 31 of 4 0.31Down
Larval tubule99 ± 274 of 4 2.50None
Larval hindgut23 ± 53 of 4 0.60None
Larval fat body445 ± 484 of 411.40Up
Larval trachea16 ± 84 of 4 0.43Down
Larval carcass107 ± 413 of 4 2.76None
S2 cells (growing)8 ± 01 of 4 0.21Down
Whole fly39 ± 34 of 4



ecdysone inducible protein (Eip74EF):

Annotation Number : CG32180
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0000567
Gbrowse : chr3L:17553257-17612893 (-) // 100.0 //
Probeset : 1635639_a_at
Accessions : protein= NP_001014590; /// NP_730286; /// NP_730287; /// NP_730288;, nucleotide= NM_001014590; /// NM_168739; /// NM_168740; /// NM_168741;
Pathway : DNA-dependent // inferred from sequence or structural similarity /// 0006355 // regulation of transcription
Interpro : DNA-dependent // inferred from electronic annotation /// 0006914 // autophagy // inferred from mutant phenotype /// 000
FlyMine data for FBgn0000567.
BDGP gene expression has embryonic in situ data for Eip74EF: 4 pix of staining in 1 body parts.
Homophila reports that CG32180 is a close match (3e-17) to human gene ETV6;TEL (NP_001978), a gene associated with Leukemia, acute myeloid, somatic, 601626 (3).
TRiP has 1 RNAi stocks for FBgn0000567 available for purchase.
VDRC has 2 RNAi stocks for FBgn0000567 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain109 ± 64 of 4 1.90Up
Head74 ± 44 of 4 1.30None
Eye97 ± 54 of 4 1.70Up
Thoracicoabdominal ganglion56 ± 44 of 4 1.00None
Salivary gland59 ± 44 of 4 1.04None
Crop145 ± 54 of 4 2.50Up
Midgut83 ± 54 of 4 1.50None
Tubule66 ± 114 of 4 1.20None
Hindgut66 ± 24 of 4 1.20None
Heart83 ± 34 of 4 1.46None
Fat body96 ± 54 of 4 1.69Up
Ovary44 ± 64 of 4 0.80None
Testis7 ± 13 of 4 0.10Down
Male accessory glands110 ± 54 of 4 1.90Up
Virgin spermatheca130 ± 84 of 4 2.27Up
Mated spermatheca122 ± 104 of 4 2.14Up
Adult carcass58 ± 24 of 4 1.00None
Larval CNS218 ± 294 of 4 3.83Up
Larval Salivary gland1319 ± 334 of 423.07Up
Larval midgut235 ± 504 of 4 4.11Up
Larval tubule885 ± 204 of 415.50Up
Larval hindgut284 ± 294 of 4 4.98Up
Larval fat body1421 ± 1034 of 424.90Up
Larval trachea947 ± 1064 of 416.56Up
Larval carcass1026 ± 1114 of 417.94Up
S2 cells (growing)62 ± 54 of 4 1.09None
Whole fly57 ± 94 of 4

Looking for FBgn0000567. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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