FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0000568 through 18771 annotations produced 3 hits

chr3L:17945062-17992921 (-) // 100.0 // (Ecdysone-induced protein 75B):

Annotation Number : CG8127
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1640781_a_at
Accessions : protein= , nucleotide= NP_524133; /// NP_730321; /// NP_730322; /// NP_730323;
Pathway : "0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription
Interpro : DNA-dependent // inferred from electronic annotation /// 0006355 // regulation of transcription
FlyMine data for full length.
Homophila reports that CG8127 is a close match (8e-11) to human gene HNF4A;MODY1;TCF14 (NP_849180), a gene associated with MODY, type I, 125850 (3);{Diabetes mellitus, noninsulin-dependent}, 125853 (3).
BioGrid reports that CG8127 interacts with CG3340 CG3340 CG18412 .

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	363 ± 27	4 of 4	12.80	Up
Head	97 ± 16	4 of 4	3.40	Up
Eye	29 ± 3	4 of 4	1.05	None
Thoracicoabdominal ganglion	169 ± 8	4 of 4	6.00	Up
Salivary gland	25 ± 2	4 of 4	0.90	None
Crop	54 ± 5	4 of 4	1.90	Up
Midgut	31 ± 2	4 of 4	1.10	None
Tubule	28 ± 2	4 of 4	1.00	None
Hindgut	34 ± 3	4 of 4	1.20	None
Heart	14 ± 2	4 of 4	0.52	None
Fat body	69 ± 9	4 of 4	2.43	Up
Ovary	11 ± 1	4 of 4	0.40	None
Testis	4 ± 0	4 of 4	0.20	Down
Male accessory glands	16 ± 3	4 of 4	0.60	None
Virgin spermatheca	32 ± 2	4 of 4	1.14	None
Mated spermatheca	33 ± 0	4 of 4	1.18	None
Adult carcass	26 ± 1	4 of 4	0.90	None
Larval CNS	353 ± 84	4 of 4	12.44	Up
Larval Salivary gland	14 ± 1	4 of 4	0.51	None
Larval midgut	32 ± 5	4 of 4	1.15	None
Larval tubule	59 ± 7	4 of 4	2.10	Up
Larval hindgut	31 ± 3	4 of 4	1.10	None
Larval fat body	125 ± 9	4 of 4	4.40	Up
Larval trachea	24 ± 2	4 of 4	0.87	None
Larval carcass	59 ± 11	4 of 4	2.09	None
S2 cells (growing)	18 ± 1	4 of 4	0.65	None
Whole fly	28 ± 5	4 of 4

Ecdysone-induced protein 75B (Eip75B):

Annotation Number : GM02640
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0000568
Gbrowse : chr3L:17946097-17946705 (-) // 100.0 //
Probeset : 1635393_s_at
Accessions : protein= NP_524133; /// NP_730321; /// NP_730322; /// NP_730323;, nucleotide= NM_079409; /// NM_168755; /// NM_168756; /// NM_168757;
Pathway : DNA-dependent // inferred from electronic annotation /// 0006355 // regulation of transcription
Interpro : DNA-dependent // non-traceable author statement /// 0007275 // multicellular organismal development // inferred from el
FlyMine data for FBgn0000568.
BDGP gene expression has embryonic in situ data for Eip75B: 9 pix of staining in 4 body parts.
TRiP has 2 RNAi stocks for FBgn0000568 available for purchase.
VDRC has 2 RNAi stocks for FBgn0000568 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	194 ± 8	4 of 4	2.90	Up
Head	72 ± 6	4 of 4	1.10	None
Eye	30 ± 3	4 of 4	0.44	Down
Thoracicoabdominal ganglion	162 ± 15	4 of 4	2.40	Up
Salivary gland	126 ± 9	4 of 4	1.85	Up
Crop	82 ± 7	4 of 4	1.20	None
Midgut	72 ± 2	4 of 4	1.10	None
Tubule	34 ± 4	4 of 4	0.50	Down
Hindgut	69 ± 4	4 of 4	1.00	None
Heart	74 ± 9	4 of 4	1.09	None
Fat body	234 ± 53	4 of 4	3.45	Up
Ovary	115 ± 5	4 of 4	1.70	Up
Testis	13 ± 1	4 of 4	0.20	Down
Male accessory glands	67 ± 2	4 of 4	1.00	None
Virgin spermatheca	26 ± 1	4 of 4	0.39	Down
Mated spermatheca	27 ± 1	4 of 4	0.40	Down
Adult carcass	162 ± 16	4 of 4	2.40	Up
Larval CNS	139 ± 19	4 of 4	2.05	Up
Larval Salivary gland	116 ± 10	4 of 4	1.72	Up
Larval midgut	145 ± 20	4 of 4	2.14	Up
Larval tubule	191 ± 19	4 of 4	2.80	Up
Larval hindgut	168 ± 10	4 of 4	2.48	Up
Larval fat body	318 ± 35	4 of 4	4.70	Up
Larval trachea	83 ± 8	4 of 4	1.23	Up
Larval carcass	177 ± 41	4 of 4	2.60	None
S2 cells (growing)	237 ± 14	4 of 4	3.49	Up
Whole fly	68 ± 2	4 of 4

chr3L:17946457-18052698 (-) // 100.0 // (Ecdysone-induced protein 75B):

Annotation Number : CG8127
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1623164_a_at
Accessions : protein= , nucleotide= NP_524133; /// NP_730321; /// NP_730322; /// NP_730323;
Pathway : "0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription
Interpro : DNA-dependent // inferred from electronic annotation /// 0006355 // regulation of transcription
FlyMine data for full length.
Homophila reports that CG8127 is a close match (8e-11) to human gene HNF4A;MODY1;TCF14 (NP_849180), a gene associated with MODY, type I, 125850 (3);{Diabetes mellitus, noninsulin-dependent}, 125853 (3).
BioGrid reports that CG8127 interacts with CG3340 CG3340 CG18412 .

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	293 ± 14	4 of 4	4.10	Up
Head	82 ± 8	1 of 4	1.10	None
Eye	73 ± 9	3 of 4	1.03	None
Thoracicoabdominal ganglion	217 ± 6	4 of 4	3.00	Up
Salivary gland	92 ± 16	0 of 4	1.28	None
Crop	113 ± 9	0 of 4	1.60	Up
Midgut	95 ± 5	0 of 4	1.30	Up
Tubule	56 ± 5	0 of 4	0.80	Down
Hindgut	82 ± 4	0 of 4	1.10	None
Heart	92 ± 5	4 of 4	1.28	Up
Fat body	172 ± 41	0 of 4	2.39	Up
Ovary	61 ± 4	1 of 4	0.90	None
Testis	24 ± 3	0 of 4	0.30	Down
Male accessory glands	82 ± 6	0 of 4	1.10	None
Virgin spermatheca	55 ± 2	0 of 4	0.78	Down
Mated spermatheca	49 ± 2	0 of 4	0.68	Down
Adult carcass	161 ± 29	2 of 4	2.20	None
Larval CNS	188 ± 13	4 of 4	2.61	Up
Larval Salivary gland	129 ± 11	0 of 4	1.80	Up
Larval midgut	130 ± 11	0 of 4	1.80	Up
Larval tubule	234 ± 15	4 of 4	3.30	Up
Larval hindgut	108 ± 10	0 of 4	1.51	Up
Larval fat body	277 ± 13	4 of 4	3.90	Up
Larval trachea	134 ± 4	4 of 4	1.86	Up
Larval carcass	184 ± 32	2 of 4	2.55	Up
S2 cells (growing)	196 ± 10	4 of 4	2.73	Up
Whole fly	72 ± 2	0 of 4

Looking for FBgn0000568. 3 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720