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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0000568 through 18771 annotations produced 3 hits



Ecdysone-induced protein 75B (Eip75B):

Annotation Number : GM02640
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0000568
Gbrowse : chr3L:17946097-17946705 (-) // 100.0 //
Probeset : 1635393_s_at
Accessions : protein= NP_524133; /// NP_730321; /// NP_730322; /// NP_730323;, nucleotide= NM_079409; /// NM_168755; /// NM_168756; /// NM_168757;
Pathway : DNA-dependent // inferred from electronic annotation /// 0006355 // regulation of transcription
Interpro : DNA-dependent // non-traceable author statement /// 0007275 // multicellular organismal development // inferred from el
FlyMine data for FBgn0000568.
BDGP gene expression has embryonic in situ data for Eip75B: 9 pix of staining in 4 body parts.
TRiP has 2 RNAi stocks for FBgn0000568 available for purchase.
VDRC has 2 RNAi stocks for FBgn0000568 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain194 84 of 4 2.90Up
Head72 64 of 4 1.10None
Eye30 34 of 4 0.44Down
Thoracicoabdominal ganglion162 154 of 4 2.40Up
Salivary gland126 94 of 4 1.85Up
Crop82 74 of 4 1.20None
Midgut72 24 of 4 1.10None
Tubule34 44 of 4 0.50Down
Hindgut69 44 of 4 1.00None
Heart74 94 of 4 1.09None
Fat body234 534 of 4 3.45Up
Ovary115 54 of 4 1.70Up
Testis13 14 of 4 0.20Down
Male accessory glands67 24 of 4 1.00None
Virgin spermatheca26 14 of 4 0.39Down
Mated spermatheca27 14 of 4 0.40Down
Adult carcass162 164 of 4 2.40Up
Larval CNS139 194 of 4 2.05Up
Larval Salivary gland116 104 of 4 1.72Up
Larval midgut145 204 of 4 2.14Up
Larval tubule191 194 of 4 2.80Up
Larval hindgut168 104 of 4 2.48Up
Larval fat body318 354 of 4 4.70Up
Larval trachea83 84 of 4 1.23Up
Larval carcass177 414 of 4 2.60None
S2 cells (growing)237 144 of 4 3.49Up
Whole fly68 24 of 4



chr3L:17945062-17992921 (-) // 100.0 // (Ecdysone-induced protein 75B):

Annotation Number : CG8127
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1640781_a_at
Accessions : protein= , nucleotide= NP_524133; /// NP_730321; /// NP_730322; /// NP_730323;
Pathway : "0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription
Interpro : DNA-dependent // inferred from electronic annotation /// 0006355 // regulation of transcription
FlyMine data for full length.
Homophila reports that CG8127 is a close match (8e-11) to human gene HNF4A;MODY1;TCF14 (NP_849180), a gene associated with MODY, type I, 125850 (3);{Diabetes mellitus, noninsulin-dependent}, 125853 (3).
BioGrid reports that CG8127 interacts with CG3340 CG3340 CG18412 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain363 274 of 412.80Up
Head97 164 of 4 3.40Up
Eye29 34 of 4 1.05None
Thoracicoabdominal ganglion169 84 of 4 6.00Up
Salivary gland25 24 of 4 0.90None
Crop54 54 of 4 1.90Up
Midgut31 24 of 4 1.10None
Tubule28 24 of 4 1.00None
Hindgut34 34 of 4 1.20None
Heart14 24 of 4 0.52None
Fat body69 94 of 4 2.43Up
Ovary11 14 of 4 0.40None
Testis4 04 of 4 0.20Down
Male accessory glands16 34 of 4 0.60None
Virgin spermatheca32 24 of 4 1.14None
Mated spermatheca33 04 of 4 1.18None
Adult carcass26 14 of 4 0.90None
Larval CNS353 844 of 412.44Up
Larval Salivary gland14 14 of 4 0.51None
Larval midgut32 54 of 4 1.15None
Larval tubule59 74 of 4 2.10Up
Larval hindgut31 34 of 4 1.10None
Larval fat body125 94 of 4 4.40Up
Larval trachea24 24 of 4 0.87None
Larval carcass59 114 of 4 2.09None
S2 cells (growing)18 14 of 4 0.65None
Whole fly28 54 of 4



chr3L:17946457-18052698 (-) // 100.0 // (Ecdysone-induced protein 75B):

Annotation Number : CG8127
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1623164_a_at
Accessions : protein= , nucleotide= NP_524133; /// NP_730321; /// NP_730322; /// NP_730323;
Pathway : "0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription
Interpro : DNA-dependent // inferred from electronic annotation /// 0006355 // regulation of transcription
FlyMine data for full length.
Homophila reports that CG8127 is a close match (8e-11) to human gene HNF4A;MODY1;TCF14 (NP_849180), a gene associated with MODY, type I, 125850 (3);{Diabetes mellitus, noninsulin-dependent}, 125853 (3).
BioGrid reports that CG8127 interacts with CG3340 CG3340 CG18412 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain293 144 of 4 4.10Up
Head82 81 of 4 1.10None
Eye73 93 of 4 1.03None
Thoracicoabdominal ganglion217 64 of 4 3.00Up
Salivary gland92 160 of 4 1.28None
Crop113 90 of 4 1.60Up
Midgut95 50 of 4 1.30Up
Tubule56 50 of 4 0.80Down
Hindgut82 40 of 4 1.10None
Heart92 54 of 4 1.28Up
Fat body172 410 of 4 2.39Up
Ovary61 41 of 4 0.90None
Testis24 30 of 4 0.30Down
Male accessory glands82 60 of 4 1.10None
Virgin spermatheca55 20 of 4 0.78Down
Mated spermatheca49 20 of 4 0.68Down
Adult carcass161 292 of 4 2.20None
Larval CNS188 134 of 4 2.61Up
Larval Salivary gland129 110 of 4 1.80Up
Larval midgut130 110 of 4 1.80Up
Larval tubule234 154 of 4 3.30Up
Larval hindgut108 100 of 4 1.51Up
Larval fat body277 134 of 4 3.90Up
Larval trachea134 44 of 4 1.86Up
Larval carcass184 322 of 4 2.55Up
S2 cells (growing)196 104 of 4 2.73Up
Whole fly72 20 of 4

Looking for FBgn0000568. 3 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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